Factsheet for Solyc07g053290.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052622	Potato	nucleus	96.86	96.86
VIT_12s0028g02350.t01	Wine grape	nucleus	63.53	62.55
KRH22294	Soybean	nucleus	55.69	57.03
KRH27035	Soybean	nucleus	54.9	56.22
KRH55806	Soybean	nucleus	51.37	50.58
KRH25720	Soybean	extracellular, nucleus	50.98	50.39
GSMUA_Achr7P10740_001	Banana	nucleus	48.24	49.0
GSMUA_Achr3P03510_001	Banana	nucleus	43.14	45.64
GSMUA_Achr10P...	Banana	nucleus	45.49	45.31
GSMUA_Achr2P20040_001	Banana	nucleus	43.92	44.98
TraesCS3A01G142900.1	Wheat	nucleus	43.92	43.08
Solyc02g076920.2.1	Tomato	cytosol, nucleus, plastid	40.39	42.92
HORVU3Hr1G027630.3	Barley	nucleus	42.35	42.86
TraesCS3D01G144700.1	Wheat	nucleus	41.96	41.96
KXG31555	Sorghum	nucleus	41.57	39.26
Solyc04g006990.2.1	Tomato	nucleus	30.98	37.44
Os01t0218100-01	Rice	nucleus	38.82	37.08
Solyc03g095980.2.1	Tomato	nucleus	28.63	34.93
Solyc05g009880.2.1	Tomato	nucleus	36.47	31.0
Solyc06g051260.2.1	Tomato	nucleus	26.67	30.22
Solyc04g014360.2.1	Tomato	nucleus	29.41	27.68
Solyc10g078380.1.1	Tomato	nucleus	27.84	27.2
Solyc04g076240.1.1	Tomato	nucleus	21.57	26.83

Protein Annotations

EnsemblPlants:Solyc07g053290.2.1	EnsemblPlantsGene:Solyc07g053290.2	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF82	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI000276BE20	UniProt:K4CFM6	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chr7:+:61766974..61769173

Molecular Weight (calculated)

27689.1 Da

IEP (calculated)

8.471

GRAVY (calculated)

-0.267

Length

255 amino acids

Sequence
(BLAST)

001: MEFLSSFNGL NEVYGGFQGI IGNGLSSSSS LVLDNESGEL VKAMVKPGGK GVNPEKALIA LKNHSEAERR RRERINGHLG TLRNLIPGTN KMDKAALLAK
101: VIGHIKELRV NAAEATKGVL VPTDIDEVKV EQQAEGSDGA TYSVKASLCC DYKHELISDL RQALDTLPLK TLRAEIATLG SRMVSVFVIT EGNEGNTEGT
201: ERCQLLITSV RQALRSVLDK FYASEEFSSR STLSSKRRRV SLLNSSSSSS LGDFW

Best Arabidopsis Sequence Match ( AT1G68810.1 )
(BLAST)

001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR

Arabidopsis Description

BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.