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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc07g053290.2.1 Tomato nucleus 62.55 63.53
PGSC0003DMT400052622 Potato nucleus 61.78 62.75
KRH22294 Soybean nucleus 59.85 62.25
KRH27035 Soybean nucleus 59.85 62.25
KRH25720 Soybean extracellular, nucleus 56.37 56.59
KRH55806 Soybean nucleus 56.37 56.37
VIT_10s0003g01160.t01 Wine grape nucleus 33.2 54.09
VIT_14s0068g01580.t01 Wine grape nucleus 53.67 52.85
GSMUA_Achr3P03510_001 Banana nucleus 47.49 51.04
GSMUA_Achr2P20040_001 Banana nucleus 47.49 49.4
GSMUA_Achr7P10740_001 Banana nucleus 47.49 49.0
GSMUA_Achr10P... Banana nucleus 48.26 48.83
HORVU3Hr1G027630.3 Barley nucleus 40.15 41.27
TraesCS3D01G144700.1 Wheat nucleus 39.77 40.39
TraesCS3A01G142900.1 Wheat nucleus 40.54 40.38
Os01t0218100-01 Rice nucleus 39.77 38.58
KXG31555 Sorghum nucleus 40.15 38.52
VIT_18s0001g07410.t01 Wine grape nucleus 28.96 33.94
VIT_08s0040g01240.t01 Wine grape nucleus 28.57 30.96
VIT_13s0067g01350.t01 Wine grape nucleus 31.66 27.61
VIT_01s0011g02940.t01 Wine grape nucleus 35.91 26.65
Protein Annotations
EntrezGene:100267703wikigene:100267703MapMan:15.5.32Gene3D:4.10.280.10ProteinID:CCB47357ProteinID:CCB47357.1
UniProt:F6H4Y9EMBL:FN595235GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0016020GO:GO:0016021GO:GO:0046983InterPro:HLH_DNA-bd_sfInterPro:IPR011598InterPro:IPR036638
EntrezGene:LOC100267703wikigene:LOC100267703PFAM:PF00010PFscan:PS50888PANTHER:PTHR12565PANTHER:PTHR12565:SF82
SMART:SM00353SUPFAM:SSF47459TIGR:TC65184UniParc:UPI00015C9665ArrayExpress:VIT_12s0028g02350EnsemblPlantsGene:VIT_12s0028g02350
EnsemblPlants:VIT_12s0028g02350.t01unigene:Vvi.14511RefSeq:XP_002280074RefSeq:XP_002280074.1InterPro:bHLH_domSEG:seg
Description
No Description!
Coordinates
chr12:+:3099890..3102328
Molecular Weight (calculated)
28305.6 Da
IEP (calculated)
9.488
GRAVY (calculated)
-0.431
Length
259 amino acids
Sequence
(BLAST)
001: MEGFSTDFPG FSDGFSENSG YGAIIRGGSS SSSLLVLDSE RGELVRAPAR LGPNEVKAEK AMVALKNHSE AERRRRGRIN AHLATLRGII PGTKKMDKAS
101: LLGEVVSHLK ELKRSAAEIS KGFLVPMDID EVRVEQQEGG LDEAPYSIKA SLCCDYKPGV LSDLRRALDT VHLKTVRAEI ATLGGRMKNV FVMTGCKDGN
201: LEDTETRKLH ANSVHQALRS VLDKFPASQD FSSRSTSSNK RQRISIFNSS SSSPFGDFW
Best Arabidopsis Sequence Match ( AT1G68810.1 )
(BLAST)
001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR
Arabidopsis Description
BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.