CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 22945350

msms PMID: 22945350 doi

C Liao, F Hochholdinger, C Li

Key Laboratory of Plant-Soil Interactions, Ministry of Education, Center for Resources, Environment and Food Security, China Agricultural University, Beijing, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55806	Soybean	nucleus	96.12	95.75
KRH27035	Soybean	nucleus	79.84	82.73
KRH22294	Soybean	nucleus	78.68	81.53
VIT_12s0028g02350.t01	Wine grape	nucleus	56.59	56.37
Solyc07g053290.2.1	Tomato	nucleus	50.39	50.98
PGSC0003DMT400052622	Potato	nucleus	49.61	50.2
GSMUA_Achr10P...	Banana	nucleus	44.57	44.92
GSMUA_Achr3P03510_001	Banana	nucleus	39.92	42.74
GSMUA_Achr2P20040_001	Banana	nucleus	41.09	42.57
GSMUA_Achr7P10740_001	Banana	nucleus	41.09	42.23
KRH50172	Soybean	nucleus	41.09	38.83
KRH71297	Soybean	nucleus	39.15	37.27
TraesCS3A01G142900.1	Wheat	nucleus	36.05	35.77
TraesCS3D01G144700.1	Wheat	nucleus	35.27	35.69
HORVU3Hr1G027630.3	Barley	nucleus	34.5	35.32
KXG31555	Sorghum	nucleus	36.43	34.81
Os01t0218100-01	Rice	nucleus	34.5	33.33
KRH16843	Soybean	cytosol	28.29	30.42
KRH72457	Soybean	nucleus	28.68	29.13
KRH66750	Soybean	plastid	27.91	28.92
KRG95083	Soybean	nucleus	27.52	28.29
KRH14931	Soybean	nucleus, plastid	28.68	28.03
KRG97707	Soybean	nucleus	29.46	27.64
KRH31167	Soybean	nucleus	29.07	26.79
KRH54953	Soybean	nucleus	25.58	26.09
KRH73206	Soybean	golgi, nucleus	28.68	25.17
KRH70619	Soybean	nucleus	33.72	23.39
KRH69661	Soybean	mitochondrion	18.99	23.11
KRH34774	Soybean	nucleus	31.4	22.95
KRH75497	Soybean	nucleus	33.33	22.87
KRG92013	Soybean	nucleus	30.62	22.77

Protein Annotations

EntrezGene:100788819	MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:ACUP02007320	EnsemblPlantsGene:GLYMA_12G122800	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	UniProt:I1LSB4	InterPro:IPR011598
InterPro:IPR036638	EnsemblPlants:KRH25720	ProteinID:KRH25720	ProteinID:KRH25720.1	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF82	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000233CA0D	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:13416395..13418519

Molecular Weight (calculated)

28483.2 Da

IEP (calculated)

7.507

GRAVY (calculated)

-0.320

Length

258 amino acids

Sequence
(BLAST)

001: MEMEDFLWGG GIAGDAPKRK SDGFEGSNGV IGSGCGSSFS LVLDRERGEL VEAPVRLERK GVSTERSIEA LKSHSEAERK RRARINAHLD TLRSVIPGAM
101: KMDKASLLGE VIRHLKELKK NAAQACEGLM IPKDNDEISV EEQEGGLNGF PYSIRASLCC EYKPGLLSDI KQALDALHLM ITRADIATLE GRMKNVFVII
201: SSKEQNFEDA AYRQFLAGSV HQALKAVLNR FSVSEDILGT RKRRRISIFS SSPLEDFL

Best Arabidopsis Sequence Match ( AT1G68810.1 )
(BLAST)

001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR

Arabidopsis Description

BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.