CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91075
KRG98502
KRG98507
KRH02371
KRH02451
KRH03966
KRH24006
KRH27971
KRH29310
KRH35698
KRH37687
KRH46360
KRH46364
KRH57236
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68810.1	KRG98502	AT4G26630.1	25387881
AT1G68810.1	KRG98507	AT4G26630.1	25387881
AT1G68810.1	KRH46360	AT4G26630.1	25387881
AT1G68810.1	KRH46364	AT4G26630.1	25387881
AT3G25710.1	KRG91075	AT1G49850.1	21798944
AT3G25710.1	KRH35698	AT1G49850.1	21798944
AT3G25710.1	KRH02371	AT3G06430.1	21798944
AT3G25710.1	KRH02451	AT3G06430.1	21798944
AT3G25710.1	KRH37687	AT3G06430.1	21798944
AT3G25710.1	KRH24006	AT3G48150.1	21798944
AT3G25710.1	KRH27971	AT3G48150.1	21798944
AT3G25710.1	KRH29310	AT3G48150.1	21798944
AT3G25710.1	KRH77487	AT3G48150.1	21798944
AT3G25710.1	KRH03966	AT3G48550.1	21798944
AT3G25710.1	KRH57236	AT3G48550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75497	Soybean	nucleus	90.32	89.36
VIT_01s0011g02940.t01	Wine grape	nucleus	70.16	74.79
KRG92013	Soybean	nucleus	65.59	70.32
KRH34774	Soybean	nucleus	66.67	70.25
Solyc05g009880.2.1	Tomato	nucleus	56.18	69.67
GSMUA_Achr6P30610_001	Banana	nucleus	35.48	69.11
GSMUA_Achr1P21280_001	Banana	nucleus	36.29	67.84
Solyc04g006990.2.1	Tomato	nucleus	38.44	67.77
PGSC0003DMT400002155	Potato	nucleus	56.18	66.99
GSMUA_Achr11P...	Banana	nucleus	35.48	66.33
GSMUA_Achr7P07280_001	Banana	nucleus	34.41	66.32
PGSC0003DMT400019294	Potato	nucleus	41.13	58.62
Bra025158.1-P	Field mustard	nucleus	34.95	58.3
CDX95989	Canola	nucleus	53.49	56.37
Bra004338.1-P	Field mustard	nucleus	53.49	56.21
CDY33592	Canola	nucleus	53.49	56.21
AT1G68810.1	Thale cress	nucleus	54.57	55.16
CDY07364	Canola	nucleus	50.54	53.26
Bra004015.1-P	Field mustard	nucleus	50.54	53.26
CDY04259	Canola	nucleus	50.54	53.11
CDY13580	Canola	nucleus	44.89	49.85
CDX83546	Canola	nucleus	44.62	49.55
AT3G25710.1	Thale cress	nucleus	44.89	48.55
CDX99756	Canola	nucleus	43.28	48.35
Bra026510.1-P	Field mustard	nucleus	42.74	47.46
HORVU4Hr1G061760.1	Barley	nucleus	49.46	45.77
TraesCS4D01G217700.1	Wheat	nucleus	49.73	45.57
TraesCS4A01G087000.1	Wheat	nucleus	49.46	45.32
TraesCS4B01G217400.1	Wheat	nucleus	49.19	45.07
Os03t0260600-01	Rice	nucleus	49.46	44.99
Zm00001d028504_P001	Maize	nucleus	45.97	43.73
TraesCS5A01G230500.1	Wheat	nucleus	39.25	43.58
TraesCS5B01G229000.1	Wheat	nucleus	38.98	43.41
KRH66750	Soybean	plastid	29.03	43.37
TraesCS5D01G237300.1	Wheat	nucleus	39.25	43.32
Os08t0432800-01	Rice	nucleus	39.52	42.61
Zm00001d032213_P001	Maize	nucleus	40.32	42.49
KRG95083	Soybean	nucleus	28.49	42.23
OQU92884	Sorghum	nucleus	49.46	41.35
KRH54953	Soybean	nucleus	27.96	41.11
EES15038	Sorghum	nucleus	42.47	40.31
Zm00001d050394_P001	Maize	nucleus	39.78	40.0
Zm00001d005740_P001	Maize	nucleus	37.37	39.94
HORVU5Hr1G066530.2	Barley	cytosol, nucleus	39.25	39.78
Os09t0410700-00	Rice	nucleus	38.71	39.67
EER98886	Sorghum	nucleus	37.63	39.66
Zm00001d047878_P001	Maize	nucleus	43.01	37.47
KRH71297	Soybean	nucleus	25.54	35.06
KRH50172	Soybean	nucleus	25.54	34.8
KRH16843	Soybean	cytosol	22.31	34.58
KRH22294	Soybean	nucleus	23.12	34.54
KRH27035	Soybean	nucleus	22.85	34.14
KRH25720	Soybean	extracellular, nucleus	23.39	33.72
KRH55806	Soybean	nucleus	22.85	32.82
KRH72457	Soybean	nucleus	22.31	32.68
KRH14931	Soybean	nucleus, plastid	22.58	31.82
KRG97707	Soybean	nucleus	23.12	31.27
KRH31167	Soybean	nucleus	22.85	30.36
KRH69661	Soybean	mitochondrion	16.94	29.72
KRH73206	Soybean	golgi, nucleus	22.85	28.91

Protein Annotations

EntrezGene:100812321	MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:ACUP02000786	EnsemblPlantsGene:GLYMA_02G100700	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
UniProt:K7K7G7	EnsemblPlants:KRH70619	ProteinID:KRH70619	ProteinID:KRH70619.1	ProteinID:KRH70620.1	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF77	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000233777F
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:9474188..9478546

Molecular Weight (calculated)

41043.6 Da

IEP (calculated)

6.706

GRAVY (calculated)

-0.555

Length

372 amino acids

Sequence
(BLAST)

001: MKKELEDQGQ CSSPPIINNN IQSYQEHLLL QQQMQQNSDI FGGGGGSKGL MFPPEVVSSI LQQQPWSIPP VPSFNPNPVH YNNTNPVHHH EQASSFLVPP
101: PTTTPSPYAS FFSSRRVVPS LHFAYEGPSS HHDHHHLRII SDTLGPMVQP GSAAPFGLQA ELGRMTAQEI MEAKALAASK SHSEAERRRR ERINNHLAKL
201: RSLLPNTTKT DKASLLAEVI QQVKELKRQT SLIVEMSTVP TESDELTVDA IDEDGKFVIK ASLCCEDRSD LLPDLIKTLK ALRLRTLRAE ITSLGGRVKN
301: VLVITGDEEE NSNTNNGEQS MQQQYCISSI QEALKAVMEK SGGGDESASG NVKRQRTTTT NNKINILEQS SL

Best Arabidopsis Sequence Match ( AT1G68810.1 )
(BLAST)

001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR

Arabidopsis Description

BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.