CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89318
CDX94304
CDX97358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68810.1	CDX89318	AT4G26630.1	25387881
AT1G68810.1	CDX94304	AT4G26630.1	25387881
AT1G68810.1	CDX97358	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004338.1-P	Field mustard	nucleus	100.0	99.72
CDY33592	Canola	nucleus	99.43	99.15
AT1G68810.1	Thale cress	nucleus	91.5	87.77
CDY07364	Canola	nucleus	86.4	86.4
CDY04259	Canola	nucleus	85.55	85.31
Solyc04g006990.2.1	Tomato	nucleus	38.81	64.93
GSMUA_Achr6P30610_001	Banana	nucleus	34.56	63.87
GSMUA_Achr1P21280_001	Banana	nucleus	35.13	62.31
GSMUA_Achr11P...	Banana	nucleus	34.28	60.8
VIT_01s0011g02940.t01	Wine grape	nucleus	60.06	60.74
Solyc05g009880.2.1	Tomato	nucleus	50.42	59.33
GSMUA_Achr7P07280_001	Banana	nucleus	32.29	59.07
PGSC0003DMT400002155	Potato	nucleus	50.71	57.37
KRH34774	Soybean	nucleus	55.52	55.52
KRG92013	Soybean	nucleus	54.39	55.33
PGSC0003DMT400019294	Potato	nucleus	40.79	55.17
KRH75497	Soybean	nucleus	57.22	53.72
KRH70619	Soybean	nucleus	56.37	53.49
CDY13580	Canola	nucleus	46.46	48.96
CDX83546	Canola	nucleus	46.18	48.66
CDX99756	Canola	nucleus	44.76	47.45
HORVU4Hr1G061760.1	Barley	nucleus	46.46	40.8
TraesCS4D01G217700.1	Wheat	nucleus	46.46	40.39
Os03t0260600-01	Rice	nucleus	46.46	40.1
TraesCS5D01G237300.1	Wheat	nucleus	38.24	40.06
TraesCS4B01G217400.1	Wheat	nucleus	45.89	39.9
TraesCS4A01G087000.1	Wheat	nucleus	45.89	39.9
TraesCS5B01G229000.1	Wheat	nucleus	37.68	39.82
TraesCS5A01G230500.1	Wheat	nucleus	37.68	39.7
CDY23874	Canola	nucleus	26.35	39.24
Zm00001d028504_P001	Maize	nucleus	43.34	39.13
Os08t0432800-01	Rice	nucleus	37.39	38.26
CDY22504	Canola	nucleus	26.06	37.86
CDX79957	Canola	nucleus	26.63	37.6
CDY06944	Canola	nucleus	26.91	37.4
Zm00001d032213_P001	Maize	nucleus	37.39	37.39
CDY57584	Canola	nucleus	26.63	37.01
CDX90384	Canola	cytosol	17.0	36.81
HORVU5Hr1G066530.2	Barley	cytosol, nucleus	38.24	36.78
Os09t0410700-00	Rice	nucleus	37.68	36.64
CDX76011	Canola	nucleus	24.08	36.64
Zm00001d005740_P001	Maize	nucleus	35.98	36.49
EER98886	Sorghum	nucleus	35.98	35.98
Zm00001d050394_P001	Maize	nucleus	37.68	35.95
OQU92884	Sorghum	nucleus	45.04	35.73
EES15038	Sorghum	nucleus	39.09	35.2
Zm00001d047878_P001	Maize	nucleus	41.93	34.66
CDX93211	Canola	nucleus, plastid	21.81	30.43
CDY07066	Canola	nucleus, plastid	21.53	30.04
CDY24921	Canola	nucleus	19.55	28.75
CDY07615	Canola	nucleus	18.7	28.33
CDY52514	Canola	cytosol	18.13	4.45

Protein Annotations

EnsemblPlants:CDX95989	EnsemblPlantsGene:GSBRNA2T00102014001	Gene3D:4.10.280.10	GO:A0A078E5W3	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF77	PFAM:PF00010	PFscan:PS50888	ProteinID:CDX95989	ProteinID:CDX95989.1
SEG:seg	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EE6216	MapMan:15.5.32	:

Description

BnaA07g27420D

Coordinates

chrLK031892:-:445351..447165

Molecular Weight (calculated)

38868.6 Da

IEP (calculated)

6.083

GRAVY (calculated)

-0.563

Length

353 amino acids

Sequence
(BLAST)

001: MCAKKEEVES SGAMNNIGNY QSDLFFHQLI SPNHHQDPSQ SESFGGPSNN VGSGSTIFSQ DSVSPIWPTL VQPPFDPFPP PSPASFYGSF FHRSRAHHQG
101: LQFGYEGFGG ATPATHHHHE QLRILSEALG PVVQAGSGPF GLQAELGKMT AQEIMDAKAL AASKSHSEAE RRRRERINNH LAKLRSILPN TTKTDKASLL
201: AEVIQHVKEL KKETSVISET NLVPTENDEL TVAFTEEEET GDGRFVIKAS LCCEDRSDLL PDMIKTLKAM RLKTLKAEIT TVGGRVKNVL FVTGDESSGE
301: EEMEEYCIGT IEEALKAVMD KSNVEETSSS GNAKRQRMSS HNTITILEQQ HHR

Best Arabidopsis Sequence Match ( AT1G68810.1 )
(BLAST)

001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR

Arabidopsis Description

BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.