Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23874 | Canola | nucleus | 90.12 | 92.41 |
| CDX79957 | Canola | nucleus | 90.95 | 88.4 |
| CDY06944 | Canola | nucleus | 90.95 | 87.01 |
| CDY57584 | Canola | nucleus | 90.53 | 86.61 |
| AT2G41130.1 | Thale cress | nucleus | 88.89 | 85.38 |
| CDX76011 | Canola | nucleus | 60.91 | 63.79 |
| KRH66750 | Soybean | plastid | 58.44 | 57.03 |
| KRG95083 | Soybean | nucleus | 58.02 | 56.18 |
| KRH54953 | Soybean | nucleus | 56.38 | 54.15 |
| VIT_08s0040g01240.t01 | Wine grape | nucleus | 52.67 | 53.56 |
| GSMUA_Achr8P23980_001 | Banana | nucleus | 44.03 | 47.14 |
| PGSC0003DMT400021599 | Potato | nucleus | 49.38 | 45.8 |
| Solyc10g078380.1.1 | Tomato | nucleus | 48.15 | 44.83 |
| Zm00001d034596_P001 | Maize | nucleus | 40.33 | 42.79 |
| TraesCS5D01G479100.1 | Wheat | nucleus | 43.21 | 41.83 |
| TraesCS5A01G466300.1 | Wheat | plastid | 42.39 | 41.2 |
| TraesCS5B01G478000.1 | Wheat | nucleus | 42.39 | 41.04 |
| EER93220 | Sorghum | nucleus | 44.03 | 40.07 |
| Os03t0811400-00 | Rice | nucleus | 42.8 | 38.81 |
| GSMUA_Achr7P21370_001 | Banana | nucleus | 41.15 | 34.01 |
| CDX90384 | Canola | cytosol | 21.4 | 31.9 |
| CDY24921 | Canola | nucleus | 30.04 | 30.42 |
| CDY07615 | Canola | nucleus | 27.98 | 29.18 |
| CDY07066 | Canola | nucleus, plastid | 30.04 | 28.85 |
| CDX93211 | Canola | nucleus, plastid | 30.04 | 28.85 |
| CDX95989 | Canola | nucleus | 37.86 | 26.06 |
| CDY33592 | Canola | nucleus | 37.86 | 25.99 |
| CDX83546 | Canola | nucleus | 35.39 | 25.67 |
| CDY13580 | Canola | nucleus | 34.98 | 25.37 |
| CDY07364 | Canola | nucleus | 36.63 | 25.21 |
| CDY04259 | Canola | nucleus | 36.63 | 25.14 |
| CDX99756 | Canola | nucleus | 32.92 | 24.02 |
| CDY52514 | Canola | cytosol | 22.22 | 3.75 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078GAU9 | UniProt:A0A078GAU9 | EnsemblPlants:CDY22504 | ProteinID:CDY22504 |
| ProteinID:CDY22504.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00019074001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF158 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EDC15C | InterPro:bHLH_dom | SEG:seg |
Description
BnaC03g23140DBnaC03g23140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAU9]
Coordinates
chrLK032132:+:220442..221804
Molecular Weight (calculated)
27126.5 Da
IEP (calculated)
8.231
GRAVY (calculated)
-0.403
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MQPESSDQML YSFLTGNQIS GGGFCVSENY KSSSTSSYYP LAISGIGETL AQDRAIAALR NHKEAERRRR ERINSHLTKL RNVLSCNSKT DKATLLAKVV
101: HRVKELKQQT LEISDSDQTL LPSETDEISV LHYGDYSNDG HIIFKASLCC DDRSDLLPDL MEILNSLHMK TLRAEMVTLG GRTRNVLVVA ADKEMHGVQS
201: VHFLQNALKS LLERSSKLLM ECSSGSGGER SKRRRALEHV IMV
101: HRVKELKQQT LEISDSDQTL LPSETDEISV LHYGDYSNDG HIIFKASLCC DDRSDLLPDL MEILNSLHMK TLRAEMVTLG GRTRNVLVVA ADKEMHGVQS
201: VHFLQNALKS LLERSSKLLM ECSSGSGGER SKRRRALEHV IMV
001: MQPETSDQML YSFLAGNEVG GGGYCVSGDY MTTMQSLCGS SSSTSSYYPL AISGIGETMA QDRALAALRN HKEAERRRRE RINSHLNKLR NVLSCNSKTD
101: KATLLAKVVQ RVRELKQQTL ETSDSDQTLL PSETDEISVL HFGDYSNDGH IIFKASLCCE DRSDLLPDLM EILKSLNMKT LRAEMVTIGG RTRSVLVVAA
201: DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGGGGER SKRRRALDHI IMV
101: KATLLAKVVQ RVRELKQQTL ETSDSDQTLL PSETDEISVL HFGDYSNDGH IIFKASLCCE DRSDLLPDLM EILKSLNMKT LRAEMVTIGG RTRSVLVVAA
201: DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGGGGER SKRRRALDHI IMV
Arabidopsis Description
BHLH106Transcription factor bHLH106 [Source:UniProtKB/Swiss-Prot;Acc:O80674]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.