Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016951.1-P | Field mustard | nucleus | 99.61 | 99.61 |
| CDY06944 | Canola | nucleus | 99.61 | 99.61 |
| CDY23874 | Canola | nucleus | 88.58 | 94.94 |
| CDX79957 | Canola | nucleus | 92.13 | 93.6 |
| AT2G41130.1 | Thale cress | nucleus | 92.91 | 93.28 |
| CDY22504 | Canola | nucleus | 86.61 | 90.53 |
| CDX76011 | Canola | nucleus | 59.84 | 65.52 |
| KRH66750 | Soybean | plastid | 56.69 | 57.83 |
| KRG95083 | Soybean | nucleus | 56.69 | 57.37 |
| VIT_08s0040g01240.t01 | Wine grape | nucleus | 53.54 | 56.9 |
| KRH54953 | Soybean | nucleus | 54.72 | 54.94 |
| GSMUA_Achr8P23980_001 | Banana | nucleus | 42.13 | 47.14 |
| PGSC0003DMT400021599 | Potato | nucleus | 46.46 | 45.04 |
| Solyc10g078380.1.1 | Tomato | nucleus | 45.28 | 44.06 |
| Zm00001d034596_P001 | Maize | nucleus | 38.19 | 42.36 |
| TraesCS5D01G479100.1 | Wheat | nucleus | 40.94 | 41.43 |
| TraesCS5A01G466300.1 | Wheat | plastid | 40.16 | 40.8 |
| TraesCS5B01G478000.1 | Wheat | nucleus | 40.16 | 40.64 |
| EER93220 | Sorghum | nucleus | 41.73 | 39.7 |
| Os03t0811400-00 | Rice | nucleus | 40.94 | 38.81 |
| GSMUA_Achr7P21370_001 | Banana | nucleus | 39.76 | 34.35 |
| CDX90384 | Canola | cytosol | 20.47 | 31.9 |
| CDY24921 | Canola | nucleus | 29.13 | 30.83 |
| CDY07615 | Canola | nucleus | 27.95 | 30.47 |
| CDY07066 | Canola | nucleus, plastid | 29.92 | 30.04 |
| CDX93211 | Canola | nucleus, plastid | 29.92 | 30.04 |
| CDX83546 | Canola | nucleus | 36.61 | 27.76 |
| CDY13580 | Canola | nucleus | 36.22 | 27.46 |
| CDX99756 | Canola | nucleus | 35.04 | 26.73 |
| CDX95989 | Canola | nucleus | 37.01 | 26.63 |
| CDY33592 | Canola | nucleus | 37.01 | 26.55 |
| CDY07364 | Canola | nucleus | 35.83 | 25.78 |
| CDY04259 | Canola | nucleus | 35.83 | 25.71 |
| CDY52514 | Canola | cytosol | 21.26 | 3.75 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078J4D4 | UniProt:A0A078J4D4 | EnsemblPlants:CDY57584 | ProteinID:CDY57584 |
| ProteinID:CDY57584.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00022391001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF158 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE95BC | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g56860DBnaC04g56860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J4D4]
Coordinates
chrLK033586:+:44438..46096
Molecular Weight (calculated)
28065.5 Da
IEP (calculated)
8.006
GRAVY (calculated)
-0.420
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MQPETSDQML YSFLTGNEIP GGGFSVSGDY MSTMQSLCGS SSSTSSYYPL AISGIGETVA QDRALAALRN HKEAERRRRE RINSHLNKLR NVLSCNSKTD
101: KATLLAKVVQ RVKELKQQTL EITDSDQTLL PSETDEISVL HYGDYSNDGH IIFKASLCCD DRSDLLPDIM EILKSLHMKT LRAEISTLGG RTRSVLVVAA
201: DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGSGGGE RSKRRRALDH IIMV
101: KATLLAKVVQ RVKELKQQTL EITDSDQTLL PSETDEISVL HYGDYSNDGH IIFKASLCCD DRSDLLPDIM EILKSLHMKT LRAEISTLGG RTRSVLVVAA
201: DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGSGGGE RSKRRRALDH IIMV
001: MQPETSDQML YSFLAGNEVG GGGYCVSGDY MTTMQSLCGS SSSTSSYYPL AISGIGETMA QDRALAALRN HKEAERRRRE RINSHLNKLR NVLSCNSKTD
101: KATLLAKVVQ RVRELKQQTL ETSDSDQTLL PSETDEISVL HFGDYSNDGH IIFKASLCCE DRSDLLPDLM EILKSLNMKT LRAEMVTIGG RTRSVLVVAA
201: DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGGGGER SKRRRALDHI IMV
101: KATLLAKVVQ RVRELKQQTL ETSDSDQTLL PSETDEISVL HFGDYSNDGH IIFKASLCCE DRSDLLPDLM EILKSLNMKT LRAEMVTIGG RTRSVLVVAA
201: DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGGGGER SKRRRALDHI IMV
Arabidopsis Description
BHLH106Transcription factor bHLH106 [Source:UniProtKB/Swiss-Prot;Acc:O80674]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.