Factsheet for TraesCS5B01G478000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G479100.1	Wheat	nucleus	98.01	98.01
TraesCS5A01G466300.1	Wheat	plastid	97.61	98.0
Zm00001d034596_P001	Maize	nucleus	71.31	78.17
Os03t0811400-00	Rice	nucleus	81.27	76.12
EER93220	Sorghum	nucleus	77.29	72.66
GSMUA_Achr8P23980_001	Banana	nucleus	49.0	54.19
CDY23874	Canola	nucleus	41.83	44.3
KRH54953	Soybean	nucleus	43.82	43.48
KRH66750	Soybean	plastid	42.23	42.57
GSMUA_Achr7P21370_001	Banana	nucleus	49.8	42.52
CDY22504	Canola	nucleus	41.04	42.39
KRG95083	Soybean	nucleus	42.23	42.23
CDX79957	Canola	nucleus	41.83	42.0
Bra004599.1-P	Field mustard	nucleus	41.43	41.6
AT2G41130.1	Thale cress	nucleus	41.04	40.71
VIT_08s0040g01240.t01	Wine grape	nucleus	38.25	40.17
CDY06944	Canola	nucleus	40.64	40.16
CDY57584	Canola	nucleus	40.64	40.16
Bra016951.1-P	Field mustard	nucleus	40.64	40.16
PGSC0003DMT400021599	Potato	nucleus	40.24	38.55
Solyc10g078380.1.1	Tomato	nucleus	39.84	38.31
AT3G56770.1	Thale cress	nucleus	33.86	36.96
Bra014672.1-P	Field mustard	nucleus	33.07	35.78
CDX76011	Canola	nucleus	33.07	35.78
TraesCS2B01G494900.1	Wheat	nucleus	25.9	30.81
TraesCS5B01G243000.1	Wheat	nucleus	25.5	30.62
TraesCS1B01G129200.1	Wheat	plastid	23.51	27.83
TraesCS3B01G120200.1	Wheat	nucleus, plastid	27.09	26.46
TraesCS3B01G120500.1	Wheat	nucleus	27.09	26.36
TraesCS5B01G229000.1	Wheat	nucleus	34.26	25.75
TraesCS4B01G217400.1	Wheat	nucleus	38.25	23.65

Protein Annotations

EnsemblPlants:TraesCS5B01G478000.1	EnsemblPlantsGene:TraesCS5B01G478000	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF158	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
MapMan:15.5.32	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:650030301..650031606

Molecular Weight (calculated)

26518.5 Da

IEP (calculated)

6.261

GRAVY (calculated)

-0.173

Length

251 amino acids

Sequence
(BLAST)

001: MFPAEASFAG AEAAMLPPFF VGSMWQSAPG GGVAAALSEE DEVAAAAAAE AAHDRAVVAT RNHREAEKRR RERIKSHLDR LRAVLACDPK IDKATLLAKA
101: VERVRELKQR MAGVVGEAAA PASHLFPTEH DEIVVLASGG GAGGAAAVFE ASLCCDDRSD LLPGLIDTLR ALRLRTLRAE MATLGGRVRN VLVLARDAGE
201: HADDDYSSSS EDGGADFLKE ALRALVERQG AAAGDRPKRR RVADMNMQAA A

Best Arabidopsis Sequence Match ( AT2G41130.1 )
(BLAST)

001: MQPETSDQML YSFLAGNEVG GGGYCVSGDY MTTMQSLCGS SSSTSSYYPL AISGIGETMA QDRALAALRN HKEAERRRRE RINSHLNKLR NVLSCNSKTD
101: KATLLAKVVQ RVRELKQQTL ETSDSDQTLL PSETDEISVL HFGDYSNDGH IIFKASLCCE DRSDLLPDLM EILKSLNMKT LRAEMVTIGG RTRSVLVVAA
201: DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGGGGER SKRRRALDHI IMV

Arabidopsis Description

BHLH106Transcription factor bHLH106 [Source:UniProtKB/Swiss-Prot;Acc:O80674]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.