Factsheet for Bra004599.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79957	Canola	nucleus	99.6	99.6
CDY23874	Canola	nucleus	94.0	99.16
Bra016951.1-P	Field mustard	nucleus	93.6	92.13
AT2G41130.1	Thale cress	nucleus	92.8	91.7
Bra014672.1-P	Field mustard	nucleus	61.2	65.95
KRH66750	Soybean	plastid	57.2	57.43
KRG95083	Soybean	nucleus	57.2	56.97
VIT_08s0040g01240.t01	Wine grape	nucleus	54.4	56.9
KRH54953	Soybean	nucleus	55.2	54.55
GSMUA_Achr8P23980_001	Banana	nucleus	42.0	46.26
PGSC0003DMT400021599	Potato	nucleus	48.4	46.18
Solyc10g078380.1.1	Tomato	nucleus	46.8	44.83
Zm00001d034596_P001	Maize	nucleus	39.2	42.79
TraesCS5D01G479100.1	Wheat	nucleus	42.0	41.83
TraesCS5A01G466300.1	Wheat	plastid	41.6	41.6
TraesCS5B01G478000.1	Wheat	nucleus	41.6	41.43
EER93220	Sorghum	nucleus	43.2	40.45
Os03t0811400-00	Rice	nucleus	42.0	39.18
Bra025158.1-P	Field mustard	nucleus	32.0	35.87
GSMUA_Achr7P21370_001	Banana	nucleus	40.0	34.01
Bra000177.1-P	Field mustard	nucleus	27.2	29.18
Bra017024.1-P	Field mustard	nucleus, plastid	28.4	28.06
Bra004338.1-P	Field mustard	nucleus	37.2	26.27
Bra004015.1-P	Field mustard	nucleus	36.0	25.5
Bra026510.1-P	Field mustard	nucleus	32.0	23.88
Bra010635.1-P	Field mustard	plastid	21.2	23.66

Protein Annotations

EnsemblPlants:Bra004599.1	EnsemblPlants:Bra004599.1-P	EnsemblPlantsGene:Bra004599	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR12565	PANTHER:PTHR12565:SF158	PFAM:PF00010	PFscan:PS50888	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000254759C	UniProt:M4CK65	MapMan:15.5.32	:

Description

AT2G41130 (E=2e-103) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA05:+:977562..978891

Molecular Weight (calculated)

27837.3 Da

IEP (calculated)

7.914

GRAVY (calculated)

-0.446

Length

250 amino acids

Sequence
(BLAST)

001: MQPESSDQML YSFLSGNQIS GGGYCGSDDY LSTMQSLCGS SSSTSSYYPL AISGIGETMA QDRALAALRN HKEAERRRRE RINSHLNKLR NVLSCNSKTD
101: KATLLAKVVQ RVKELKQQTL EISESDQTLL PSETDEISVL HYGDYSNDGH IIFKASLCCD DRSDLLPDLM EILKSLHMKT LRADMVTLGG RTRSVLVVAA
201: DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGERSKR RRALDQIIMV

Best Arabidopsis Sequence Match ( AT2G41130.1 )
(BLAST)

001: MQPETSDQML YSFLAGNEVG GGGYCVSGDY MTTMQSLCGS SSSTSSYYPL AISGIGETMA QDRALAALRN HKEAERRRRE RINSHLNKLR NVLSCNSKTD
101: KATLLAKVVQ RVRELKQQTL ETSDSDQTLL PSETDEISVL HFGDYSNDGH IIFKASLCCE DRSDLLPDLM EILKSLNMKT LRAEMVTIGG RTRSVLVVAA
201: DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGGGGER SKRRRALDHI IMV

Arabidopsis Description

BHLH106Transcription factor bHLH106 [Source:UniProtKB/Swiss-Prot;Acc:O80674]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.