Factsheet for Bra016951.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06944	Canola	nucleus	100.0	100.0
CDY57584	Canola	nucleus	99.61	99.61
Bra004599.1-P	Field mustard	nucleus	92.13	93.6
AT2G41130.1	Thale cress	nucleus	92.91	93.28
Bra014672.1-P	Field mustard	nucleus	59.84	65.52
KRH66750	Soybean	plastid	56.69	57.83
KRG95083	Soybean	nucleus	56.69	57.37
VIT_08s0040g01240.t01	Wine grape	nucleus	53.94	57.32
KRH54953	Soybean	nucleus	54.72	54.94
GSMUA_Achr8P23980_001	Banana	nucleus	42.13	47.14
PGSC0003DMT400021599	Potato	nucleus	46.85	45.42
Solyc10g078380.1.1	Tomato	nucleus	45.67	44.44
Zm00001d034596_P001	Maize	nucleus	38.19	42.36
TraesCS5D01G479100.1	Wheat	nucleus	40.94	41.43
TraesCS5A01G466300.1	Wheat	plastid	40.16	40.8
TraesCS5B01G478000.1	Wheat	nucleus	40.16	40.64
EER93220	Sorghum	nucleus	41.73	39.7
Os03t0811400-00	Rice	nucleus	40.94	38.81
Bra025158.1-P	Field mustard	nucleus	33.07	37.67
GSMUA_Achr7P21370_001	Banana	nucleus	39.76	34.35
Bra000177.1-P	Field mustard	nucleus	27.95	30.47
Bra017024.1-P	Field mustard	nucleus, plastid	29.13	29.25
Bra004338.1-P	Field mustard	nucleus	37.4	26.84
Bra026510.1-P	Field mustard	nucleus	34.65	26.27
Bra004015.1-P	Field mustard	nucleus	36.22	26.06
Bra010635.1-P	Field mustard	plastid	20.87	23.66

Protein Annotations

EnsemblPlants:Bra016951.1	EnsemblPlants:Bra016951.1-P	EnsemblPlantsGene:Bra016951	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR12565	PANTHER:PTHR12565:SF158	PFAM:PF00010	PFscan:PS50888	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00025452F0	UniProt:M4DKC2	MapMan:15.5.32	:

Description

AT2G41130 (E=1e-103) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA04:+:17420913..17422288

Molecular Weight (calculated)

28055.5 Da

IEP (calculated)

8.006

GRAVY (calculated)

-0.417

Length

254 amino acids

Sequence
(BLAST)

001: MQPETSDQML YSFLTGNEIS GGGFSVSGDY MSTMQSLCGS SSSTSSYYPL AISGIGETVA QDRALAALRN HKEAERRRRE RINSHLNKLR NVLSCNSKTD
101: KATLLAKVVQ RVKELKQQTL EITDSDQTLL PSETDEISVL HYGDYSNDGH IIFKASLCCD DRSDLLPDIM EILKSLHMKT LRAEISTLGG RTRSVLVVAA
201: DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGSGGGE RSKRRRALDH IIMV

Best Arabidopsis Sequence Match ( AT2G41130.1 )
(BLAST)

001: MQPETSDQML YSFLAGNEVG GGGYCVSGDY MTTMQSLCGS SSSTSSYYPL AISGIGETMA QDRALAALRN HKEAERRRRE RINSHLNKLR NVLSCNSKTD
101: KATLLAKVVQ RVRELKQQTL ETSDSDQTLL PSETDEISVL HFGDYSNDGH IIFKASLCCE DRSDLLPDLM EILKSLNMKT LRAEMVTIGG RTRSVLVVAA
201: DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGGGGER SKRRRALDHI IMV

Arabidopsis Description

BHLH106Transcription factor bHLH106 [Source:UniProtKB/Swiss-Prot;Acc:O80674]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.