Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra010432.1-P | |
| Bra026415.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G68810.1 | Bra010432.1-P | AT4G26630.1 | 25387881 |
| AT1G68810.1 | Bra026415.1-P | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95989 | Canola | nucleus | 99.72 | 100.0 |
| CDY33592 | Canola | nucleus | 99.44 | 99.44 |
| AT1G68810.1 | Thale cress | nucleus | 91.53 | 88.04 |
| Bra004015.1-P | Field mustard | nucleus | 86.44 | 86.69 |
| Solyc04g006990.2.1 | Tomato | nucleus | 38.7 | 64.93 |
| GSMUA_Achr6P30610_001 | Banana | nucleus | 34.46 | 63.87 |
| GSMUA_Achr1P21280_001 | Banana | nucleus | 35.03 | 62.31 |
| GSMUA_Achr11P... | Banana | nucleus | 34.18 | 60.8 |
| VIT_01s0011g02940.t01 | Wine grape | nucleus | 59.89 | 60.74 |
| Solyc05g009880.2.1 | Tomato | nucleus | 50.28 | 59.33 |
| GSMUA_Achr7P07280_001 | Banana | nucleus | 32.2 | 59.07 |
| Bra025158.1-P | Field mustard | nucleus | 36.44 | 57.85 |
| PGSC0003DMT400002155 | Potato | nucleus | 50.56 | 57.37 |
| KRH34774 | Soybean | nucleus | 55.37 | 55.52 |
| KRG92013 | Soybean | nucleus | 54.24 | 55.33 |
| PGSC0003DMT400019294 | Potato | nucleus | 40.68 | 55.17 |
| KRH75497 | Soybean | nucleus | 57.06 | 53.72 |
| KRH70619 | Soybean | nucleus | 56.21 | 53.49 |
| Bra026510.1-P | Field mustard | nucleus | 44.35 | 46.87 |
| HORVU4Hr1G061760.1 | Barley | nucleus | 46.33 | 40.8 |
| TraesCS4D01G217700.1 | Wheat | nucleus | 46.33 | 40.39 |
| Os03t0260600-01 | Rice | nucleus | 46.33 | 40.1 |
| TraesCS5D01G237300.1 | Wheat | nucleus | 38.14 | 40.06 |
| TraesCS4A01G087000.1 | Wheat | nucleus | 45.76 | 39.9 |
| TraesCS4B01G217400.1 | Wheat | nucleus | 45.76 | 39.9 |
| TraesCS5B01G229000.1 | Wheat | nucleus | 37.57 | 39.82 |
| TraesCS5A01G230500.1 | Wheat | nucleus | 37.57 | 39.7 |
| Zm00001d028504_P001 | Maize | nucleus | 43.22 | 39.13 |
| Os08t0432800-01 | Rice | nucleus | 37.29 | 38.26 |
| Bra016951.1-P | Field mustard | nucleus | 26.84 | 37.4 |
| Zm00001d032213_P001 | Maize | nucleus | 37.29 | 37.39 |
| Bra004599.1-P | Field mustard | nucleus | 26.27 | 37.2 |
| HORVU5Hr1G066530.2 | Barley | cytosol, nucleus | 38.14 | 36.78 |
| Os09t0410700-00 | Rice | nucleus | 37.57 | 36.64 |
| Bra014672.1-P | Field mustard | nucleus | 24.01 | 36.64 |
| Zm00001d005740_P001 | Maize | nucleus | 35.88 | 36.49 |
| EER98886 | Sorghum | nucleus | 35.88 | 35.98 |
| Zm00001d050394_P001 | Maize | nucleus | 37.57 | 35.95 |
| OQU92884 | Sorghum | nucleus | 44.92 | 35.73 |
| EES15038 | Sorghum | nucleus | 38.98 | 35.2 |
| Zm00001d047878_P001 | Maize | nucleus | 41.81 | 34.66 |
| Bra017024.1-P | Field mustard | nucleus, plastid | 21.19 | 29.64 |
| Bra000177.1-P | Field mustard | nucleus | 18.64 | 28.33 |
| Bra010635.1-P | Field mustard | plastid | 17.8 | 28.12 |
Protein Annotations
| EnsemblPlants:Bra004338.1 | EnsemblPlants:Bra004338.1-P | EnsemblPlantsGene:Bra004338 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF77 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI00025417BC | UniProt:M4CJF4 | MapMan:15.5.32 | : | : |
Description
AT1G68810 (E=3e-140) | basic helix-loop-helix (bHLH) family protein
Coordinates
chrA07:+:18096100..18097681
Molecular Weight (calculated)
38996.8 Da
IEP (calculated)
6.083
GRAVY (calculated)
-0.571
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MCAKKEEVES SGAMNNIGNY QSDLFFHQLI SPNHHQDPSQ SESFGGPSNN VGSGSTIFSQ DSVSPIWPTL VQPPFDPFPP PSPASFYGSF FHRSRAHHQG
101: LQFGYEGFGG ATPATHHHHE QLRILSEALG PVVQAGSGPF GLQAELGKMT AQEIMDAKAL AASKSHSEAE RRRRERINNH LAKLRSILPN TTKTDKASLL
201: AEVIQHVKEL KKETSVISET NLVPTENDEL TVAFTEEEET GDGRFVIKAS LCCEDRSDLL PDMIKTLKAM RLKTLKAEIT TVGGRVKNVL FVTGDESSGE
301: EEMEEYCIGT IEEALKAVMD KSNVEETSSS GNAKRQRMSS HNTITILEQQ QHHR
101: LQFGYEGFGG ATPATHHHHE QLRILSEALG PVVQAGSGPF GLQAELGKMT AQEIMDAKAL AASKSHSEAE RRRRERINNH LAKLRSILPN TTKTDKASLL
201: AEVIQHVKEL KKETSVISET NLVPTENDEL TVAFTEEEET GDGRFVIKAS LCCEDRSDLL PDMIKTLKAM RLKTLKAEIT TVGGRVKNVL FVTGDESSGE
301: EEMEEYCIGT IEEALKAVMD KSNVEETSSS GNAKRQRMSS HNTITILEQQ QHHR
001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR
Arabidopsis Description
BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.