Factsheet for Bra014672.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76011	Canola	nucleus	99.57	99.57
AT3G56770.1	Thale cress	nucleus	72.41	73.04
Bra004599.1-P	Field mustard	nucleus	65.95	61.2
Bra016951.1-P	Field mustard	nucleus	65.52	59.84
KRH54953	Soybean	nucleus	51.72	47.43
KRH66750	Soybean	plastid	50.86	47.39
KRG95083	Soybean	nucleus	50.43	46.61
VIT_08s0040g01240.t01	Wine grape	nucleus	46.12	44.77
GSMUA_Achr8P23980_001	Banana	nucleus	37.5	38.33
PGSC0003DMT400021599	Potato	nucleus	43.1	38.17
Solyc10g078380.1.1	Tomato	nucleus	42.24	37.55
Zm00001d034596_P001	Maize	nucleus	34.05	34.5
TraesCS5D01G479100.1	Wheat	nucleus	36.64	33.86
TraesCS5A01G466300.1	Wheat	plastid	36.21	33.6
TraesCS5B01G478000.1	Wheat	nucleus	35.78	33.07
Os03t0811400-00	Rice	nucleus	37.5	32.46
EER93220	Sorghum	nucleus	37.07	32.21
Bra025158.1-P	Field mustard	nucleus	30.17	31.39
GSMUA_Achr7P21370_001	Banana	nucleus	37.5	29.59
Bra000177.1-P	Field mustard	nucleus	28.02	27.9
Bra017024.1-P	Field mustard	nucleus, plastid	29.31	26.88
Bra004338.1-P	Field mustard	nucleus	36.64	24.01
Bra004015.1-P	Field mustard	nucleus	34.91	22.95
Bra010635.1-P	Field mustard	plastid	21.12	21.88
Bra026510.1-P	Field mustard	nucleus	30.17	20.9

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra014672	EnsemblPlants:Bra014672.1	EnsemblPlants:Bra014672.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0009719	GO:GO:0010200	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M4DDV3	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF158	SMART:SM00353	SUPFAM:SSF47459	SUPFAM:SSF55021	UniParc:UPI0002544777
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

AT3G56770 (E=2e-072) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA04:+:2126428..2127868

Molecular Weight (calculated)

26385.4 Da

IEP (calculated)

8.213

GRAVY (calculated)

-0.622

Length

232 amino acids

Sequence
(BLAST)

001: MQPEISDQIL YSFLIGGSCA SSTTTTTTRS SFYPFAMEDT SSQDKALATT LRKHREGERM RRERINSSLN KLRNLLSCNP KTDKATLLAK VVQRVNELKQ
101: QTLEISNENV PSETDEISVL NFENCSNDDG RIIFKLSFCC EDRPDLMQDL VETLKSLQME TLYAYMTTIG GRTRNDLVVV GNKEQHSVES VKLLQNAFES
201: LLERSNQSVM MGHGGGRERS KRRRPLDHIK RV

Best Arabidopsis Sequence Match ( AT3G56770.1 )
(BLAST)

001: MQPEVSDQIF YAFLTGGLCA SSTSTTVTSS SDPFATVYED KALASLRNHK EAERKRRARI NSHLNKLRKL LSCNSKTDKS TLLAKVVQRV KELKQQTLEI
101: TDETIPSETD EISVLNIEDC SRGDDRRIIF KVSFCCEDRP ELLKDLMETL KSLQMETLFA DMTTVGGRTR NVLVVAADKE HHGVQSVNFL QNALKSLLER
201: SSKSVMVGHG GGGGEERLKR RRALDHIIMV

Arabidopsis Description

BHLH107Putative transcription factor bHLH107 [Source:UniProtKB/Swiss-Prot;Acc:Q9LET0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.