Factsheet for Bra017024.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07066	Canola	nucleus, plastid	98.81	98.81
AT2G40200.1	Thale cress	nucleus	80.24	79.92
Bra000177.1-P	Field mustard	nucleus	72.33	78.54
Solyc03g095980.2.1	Tomato	nucleus	34.39	41.63
PGSC0003DMT400071293	Potato	nucleus	36.76	41.52
KRG97707	Soybean	nucleus	41.9	38.55
KRH14931	Soybean	nucleus, plastid	39.92	38.26
PGSC0003DMT400040448	Potato	nucleus	33.99	38.22
KRH31167	Soybean	nucleus	41.5	37.5
Solyc06g051260.2.1	Tomato	nucleus	32.41	36.44
KRH73206	Soybean	golgi, nucleus	41.11	35.37
VIT_13s0067g01350.t01	Wine grape	nucleus	41.11	35.02
EES00272	Sorghum	plastid	31.62	33.06
GSMUA_Achr5P29390_001	Banana	nucleus	30.04	32.62
TraesCS3A01G102900.1	Wheat	nucleus, plastid	31.23	31.85
TraesCS3D01G104800.1	Wheat	cytosol	21.74	31.61
TraesCS3B01G120200.1	Wheat	nucleus, plastid	32.02	31.52
TraesCS3B01G120500.1	Wheat	nucleus	32.02	31.4
Bra025158.1-P	Field mustard	nucleus	27.67	31.39
TraesCS1B01G129200.1	Wheat	plastid	26.09	31.13
TraesCS1A01G110400.1	Wheat	plastid	25.69	30.66
TraesCS1D01G112000.1	Wheat	plastid	25.3	30.33
Zm00001d039764_P001	Maize	nucleus	30.83	29.89
HORVU3Hr1G018680.1	Barley	nucleus	31.62	29.85
HORVU1Hr1G024280.2	Barley	plastid	24.9	29.72
Bra014672.1-P	Field mustard	nucleus	26.88	29.31
Bra016951.1-P	Field mustard	nucleus	29.25	29.13
Os05t0163900-01	Rice	nucleus	30.43	28.41
Bra004599.1-P	Field mustard	nucleus	28.06	28.4
TraesCS3D01G105100.2	Wheat	mitochondrion, nucleus	31.23	28.21
EES19097	Sorghum	nucleus, plastid	23.72	26.09
TraesCS3A01G102600.1	Wheat	extracellular, mitochondrion	32.41	24.55
Zm00001d037528_P001	Maize	plastid	25.69	23.9
Bra026510.1-P	Field mustard	nucleus	28.85	21.79
Bra004338.1-P	Field mustard	nucleus	29.64	21.19
Bra004015.1-P	Field mustard	nucleus	29.25	20.96
Bra010635.1-P	Field mustard	plastid	17.79	20.09

Protein Annotations

EnsemblPlants:Bra017024.1	EnsemblPlants:Bra017024.1-P	EnsemblPlantsGene:Bra017024	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF201	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002544F29	UniProt:M4DKJ4	MapMan:15.5.32	:	:

Description

AT2G40200 (E=9e-091) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA04:+:17058296..17059715

Molecular Weight (calculated)

28119.9 Da

IEP (calculated)

7.793

GRAVY (calculated)

-0.461

Length

253 amino acids

Sequence
(BLAST)

001: MENSYESAAK WSDSNSPYNM LSCSLLQSDS DLSRFNLGFS SSSSSGNFPS DEFVGGIEKG ELLSRSHRLA EKRRRDRINS HLSALRKLVP NSDKLDKAAL
101: LATVIEQVKE LKQTATQSPT FQELPTEANE VTVQPETISN DFEPDTIIFK ASFCCEDQPE AISEIIRVLT KFQLETLQAE IICVGGRLRI NFILKDSNCK
201: DTTTNSVSST KALKQSLCAA LNRIASSSSS STSSVSRIRS KRQRWFLSSH YSQ

Best Arabidopsis Sequence Match ( AT2G40200.1 )
(BLAST)

001: MENSYDSSKW SDSTTPYMVS WSLQSESSDS DWNRFNLGFS SSSFGGNFPA DDCVGGIEKA ESLSRSHRLA EKRRRDRINS HLTALRKLVP NSDKLDKAAL
101: LATVIEQVKE LKQKAAESPI FQDLPTEADE VTVQPETISD FESNTNTIIF KASFCCEDQP EAISEIIRVL TKLQLETIQA EIISVGGRMR INFILKDSNC
201: NETTNIAASA KALKQSLCSA LNRITSSSTT TSSVCRIRSK RQRWFLSSHY SHNE

Arabidopsis Description

BHLH51Transcription factor bHLH51 [Source:UniProtKB/Swiss-Prot;Acc:Q9XEF0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.