CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039764_P001	Maize	nucleus	85.95	79.69
TraesCS3D01G104800.1	Wheat	cytosol	49.17	68.39
TraesCS3A01G102900.1	Wheat	nucleus, plastid	69.01	67.34
TraesCS3B01G120500.1	Wheat	nucleus	71.49	67.05
TraesCS3B01G120200.1	Wheat	nucleus, plastid	71.07	66.93
HORVU3Hr1G018680.1	Barley	nucleus	71.9	64.93
TraesCS3D01G105100.2	Wheat	mitochondrion, nucleus	68.59	59.29
TraesCS3A01G102600.1	Wheat	extracellular, mitochondrion	70.25	50.9
EES19097	Sorghum	nucleus, plastid	48.35	50.87
GSMUA_Achr5P29390_001	Banana	nucleus	42.15	43.78
PGSC0003DMT400071293	Potato	nucleus	36.78	39.73
Solyc03g095980.2.1	Tomato	nucleus	34.3	39.71
PGSC0003DMT400040448	Potato	nucleus	33.88	36.44
Solyc06g051260.2.1	Tomato	nucleus	32.64	35.11
KRH14931	Soybean	nucleus, plastid	36.36	33.33
KRG97707	Soybean	nucleus	37.6	33.09
KRH31167	Soybean	nucleus	37.19	32.14
CDY07066	Canola	nucleus, plastid	33.47	32.02
Bra017024.1-P	Field mustard	nucleus, plastid	33.06	31.62
CDX93211	Canola	nucleus, plastid	33.06	31.62
EER96881	Sorghum	cytosol, nucleus, peroxisome, plastid	28.93	31.11
AT2G40200.1	Thale cress	nucleus	32.64	31.1
KRH73206	Soybean	golgi, nucleus	36.36	29.93
CDY07615	Canola	nucleus	28.51	29.61
Bra000177.1-P	Field mustard	nucleus	28.51	29.61
VIT_13s0067g01350.t01	Wine grape	nucleus	35.95	29.29
CDY24921	Canola	nucleus	28.93	29.17
KXG31555	Sorghum	nucleus	31.82	28.52
EES14023	Sorghum	nucleus	27.69	27.46
EER93220	Sorghum	nucleus	29.34	26.59
EER98886	Sorghum	nucleus	29.34	20.11
EES15038	Sorghum	nucleus	30.17	18.62
OQU92884	Sorghum	nucleus	33.06	17.98

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:8075119	UniProt:C5XP74	ncoils:Coil	EnsemblPlants:EES00272
ProteinID:EES00272	ProteinID:EES00272.2	ProteinID:EES02425.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF190	SMART:SM00353	EnsemblPlantsGene:SORBI_3003G061400	SUPFAM:SSF47459	UniParc:UPI0001A8512C
RefSeq:XP_002457305.1	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:5394259..5396177

Molecular Weight (calculated)

26213.6 Da

IEP (calculated)

10.676

GRAVY (calculated)

-0.321

Length

242 amino acids

Sequence
(BLAST)

001: MAACQPLQGK ELQPVLLPRQ ASSAPRAVRV APPEMSSSSG SGRSTTEARA LKIHSEAERR RRERINAHLA TLRRMIPDTR QMDKATLLAR VVEQVKLLKR
101: NASEATTQSV PLPPETDEVS IELHTGAGAD KVIYIKASIS CDDRPDLVAG LAQAFHGLRL RTVRADMTSL GGRVQHVFVL CKEEGWGGAG VGAASASLRS
201: LKEAVRQALA RVASPETAYG SSSPFQSKRQ RILESHYSIM SI

Best Arabidopsis Sequence Match ( AT2G40200.1 )
(BLAST)

001: MENSYDSSKW SDSTTPYMVS WSLQSESSDS DWNRFNLGFS SSSFGGNFPA DDCVGGIEKA ESLSRSHRLA EKRRRDRINS HLTALRKLVP NSDKLDKAAL
101: LATVIEQVKE LKQKAAESPI FQDLPTEADE VTVQPETISD FESNTNTIIF KASFCCEDQP EAISEIIRVL TKLQLETIQA EIISVGGRMR INFILKDSNC
201: NETTNIAASA KALKQSLCSA LNRITSSSTT TSSVCRIRSK RQRWFLSSHY SHNE

Arabidopsis Description

BHLH51Transcription factor bHLH51 [Source:UniProtKB/Swiss-Prot;Acc:Q9XEF0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.