Factsheet for VIT_13s0067g01350.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14931	Soybean	nucleus, plastid	50.84	57.2
KRG97707	Soybean	nucleus	52.19	56.36
KRH31167	Soybean	nucleus	51.85	55.0
Solyc03g095980.2.1	Tomato	nucleus	38.05	54.07
PGSC0003DMT400071293	Potato	nucleus	40.74	54.02
KRH73206	Soybean	golgi, nucleus	52.53	53.06
PGSC0003DMT400040448	Potato	nucleus	37.71	49.78
Solyc06g051260.2.1	Tomato	nucleus	36.7	48.44
Bra017024.1-P	Field mustard	nucleus, plastid	35.02	41.11
CDX93211	Canola	nucleus, plastid	35.02	41.11
CDY07066	Canola	nucleus, plastid	35.02	41.11
AT2G40200.1	Thale cress	nucleus	35.02	40.94
Bra000177.1-P	Field mustard	nucleus	30.98	39.48
GSMUA_Achr5P29390_001	Banana	nucleus	30.98	39.48
CDY07615	Canola	nucleus	30.98	39.48
CDY24921	Canola	nucleus	31.65	39.17
EES00272	Sorghum	plastid	29.29	35.95
VIT_10s0003g01160.t01	Wine grape	nucleus	18.52	34.59
TraesCS3D01G104800.1	Wheat	cytosol	20.2	34.48
HORVU1Hr1G024280.2	Barley	plastid	24.24	33.96
TraesCS3A01G102900.1	Wheat	nucleus, plastid	28.28	33.87
TraesCS3B01G120500.1	Wheat	nucleus	28.62	32.95
TraesCS3B01G120200.1	Wheat	nucleus, plastid	28.28	32.68
TraesCS1B01G129200.1	Wheat	plastid	23.23	32.55
TraesCS1D01G112000.1	Wheat	plastid	22.9	32.23
Zm00001d039764_P001	Maize	nucleus	28.28	32.18
VIT_18s0001g07410.t01	Wine grape	nucleus	23.57	31.67
VIT_12s0028g02350.t01	Wine grape	nucleus	27.61	31.66
TraesCS1A01G110400.1	Wheat	plastid	22.56	31.6
VIT_08s0040g01240.t01	Wine grape	nucleus	25.25	31.38
VIT_14s0068g01580.t01	Wine grape	nucleus	26.6	30.04
HORVU3Hr1G018680.1	Barley	nucleus	26.94	29.85
TraesCS3D01G105100.2	Wheat	mitochondrion, nucleus	27.95	29.64
EES19097	Sorghum	nucleus, plastid	22.56	29.13
Os05t0163900-01	Rice	nucleus	25.59	28.04
Zm00001d037528_P001	Maize	plastid	24.92	27.21
TraesCS3A01G102600.1	Wheat	extracellular, mitochondrion	27.95	24.85
VIT_01s0011g02940.t01	Wine grape	nucleus	26.6	22.64

Protein Annotations

EntrezGene:100265720	wikigene:100265720	MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:CBI25454	ProteinID:CBI25454.3
UniProt:D7T4M2	EMBL:FN595514	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100265720	wikigene:LOC100265720	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF181	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0001BE235F
ArrayExpress:VIT_13s0067g01350	EnsemblPlantsGene:VIT_13s0067g01350	EnsemblPlants:VIT_13s0067g01350.t01	RefSeq:XP_002272668	RefSeq:XP_002272668.2	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr13:+:764444..766655

Molecular Weight (calculated)

33191.7 Da

IEP (calculated)

7.266

GRAVY (calculated)

-0.263

Length

297 amino acids

Sequence
(BLAST)

001: MGTISTTRCS EIEFTEWLIG SRINLLSPLY GDRFVAGYER GCLLDMENCL YSGWAQEADC TQCDAAPVLP WLPPPHVSAS FQFHGFPSWS LPVEKMATED
101: RSDERTATAS KSHSQAEKRR RDRINAQLAT LRKLIPKSEK MDKAALLGSV IDHVKDLKRQ AMEVSDVFTV PTEVDEVTVD CEFDQGLVPN NTIKTPENIF
201: IKASVCCEDR PELFSELIRA LQGLKLTTIR ADMASLSGRT KSILVLCSKD DSNSVCISTL KQSLKVVLSR IVSSSTASNY RITSKRQRFF LPSNFPQ

Best Arabidopsis Sequence Match ( AT2G40200.1 )
(BLAST)

001: MENSYDSSKW SDSTTPYMVS WSLQSESSDS DWNRFNLGFS SSSFGGNFPA DDCVGGIEKA ESLSRSHRLA EKRRRDRINS HLTALRKLVP NSDKLDKAAL
101: LATVIEQVKE LKQKAAESPI FQDLPTEADE VTVQPETISD FESNTNTIIF KASFCCEDQP EAISEIIRVL TKLQLETIQA EIISVGGRMR INFILKDSNC
201: NETTNIAASA KALKQSLCSA LNRITSSSTT TSSVCRIRSK RQRWFLSSHY SHNE

Arabidopsis Description

BHLH51Transcription factor bHLH51 [Source:UniProtKB/Swiss-Prot;Acc:Q9XEF0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.