Factsheet for VIT_18s0001g07410.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16843	Soybean	cytosol	52.49	48.33
KRH72457	Soybean	nucleus	55.2	48.03
Solyc04g076240.1.1	Tomato	nucleus	40.72	43.9
PGSC0003DMT400024185	Potato	nucleus	40.27	43.63
GSMUA_Achr3P06780_001	Banana	cytosol	38.91	41.95
TraesCS5A01G245600.1	Wheat	nucleus	35.29	40.41
TraesCS2B01G494900.1	Wheat	nucleus	38.01	39.81
TraesCS2A01G472300.1	Wheat	nucleus	37.56	39.52
Os08t0477900-00	Rice	nucleus	39.82	39.46
Zm00001d005919_P001	Maize	nucleus	37.56	38.78
GSMUA_Achr9P15140_001	Banana	plastid	40.27	38.7
TraesCS5B01G243000.1	Wheat	nucleus	36.2	38.28
TraesCS5D01G252300.1	Wheat	nucleus	35.75	37.8
TraesCS2D01G472000.1	Wheat	nucleus	37.1	37.79
EER96881	Sorghum	cytosol, nucleus, peroxisome, plastid	38.46	37.78
Zm00001d020763_P001	Maize	nucleus	38.46	37.28
HORVU5Hr1G069580.1	Barley	nucleus	35.29	37.14
Zm00001d031818_P001	Maize	nucleus	38.01	35.15
EES14023	Sorghum	nucleus	38.46	34.84
VIT_10s0003g01160.t01	Wine grape	nucleus	21.27	29.56
VIT_12s0028g02350.t01	Wine grape	nucleus	33.94	28.96
VIT_08s0040g01240.t01	Wine grape	nucleus	29.86	27.62
VIT_14s0068g01580.t01	Wine grape	nucleus	31.67	26.62
VIT_13s0067g01350.t01	Wine grape	nucleus	31.67	23.57
VIT_01s0011g02940.t01	Wine grape	nucleus	36.2	22.92

Protein Annotations

EntrezGene:104882497	MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:CCB45647	ProteinID:CCB45647.1	UniProt:F6H125
EMBL:FN595227	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF307
SMART:SM00353	SUPFAM:SSF47459	SUPFAM:SSF55021	UniParc:UPI00015C79FC	ArrayExpress:VIT_18s0001g07410	EnsemblPlantsGene:VIT_18s0001g07410
EnsemblPlants:VIT_18s0001g07410.t01	RefSeq:XP_010664394.1	InterPro:bHLH_dom	SEG:seg	:	:

Description

No Description!

Coordinates

chr18:-:5667975..5668837

Molecular Weight (calculated)

24018.4 Da

IEP (calculated)

9.297

GRAVY (calculated)

-0.558

Length

221 amino acids

Sequence
(BLAST)

001: MLPFQSYYEP VQQMKLKLED GDSGTRVEGK STAACNSHSE AERRRRQRIN AHLSTLRTLL PNTTKTDKAS LLAEVVRHVT ELRKRAADVA GQNGDGCCSG
101: GGSESWTFPG ETDEVTLGYY EGDERLIKAT LCCEDRPSLN RDLTQAIGSV RARVVRAEMA TVGGRTKSVV VMQWGGGGEA ELGNLRRALK AVVENRASGF
201: GSTGVFPLHK RPRFSTSNAS S

Best Arabidopsis Sequence Match ( AT1G68810.1 )
(BLAST)

001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR

Arabidopsis Description

BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.