Factsheet for TraesCS5A01G245600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G243000.1	Wheat	nucleus	97.41	89.95
TraesCS5D01G252300.1	Wheat	nucleus	97.41	89.95
HORVU5Hr1G069580.1	Barley	nucleus	95.34	87.62
Zm00001d005919_P001	Maize	nucleus	72.54	65.42
Zm00001d020763_P001	Maize	nucleus	75.65	64.04
EER96881	Sorghum	cytosol, nucleus, peroxisome, plastid	73.06	62.67
TraesCS2A01G472300.1	Wheat	nucleus	65.8	60.48
GSMUA_Achr3P06780_001	Banana	cytosol	57.51	54.15
GSMUA_Achr9P15140_001	Banana	plastid	56.99	47.83
VIT_18s0001g07410.t01	Wine grape	nucleus	40.41	35.29
KRH16843	Soybean	cytosol	42.49	34.17
CDX90384	Canola	cytosol	27.98	33.13
KRH72457	Soybean	nucleus	43.01	32.68
PGSC0003DMT400060615	Potato	cytosol	36.79	31.7
TraesCS1A01G110400.1	Wheat	plastid	32.64	29.72
PGSC0003DMT400024185	Potato	nucleus	31.09	29.41
Solyc04g076240.1.1	Tomato	nucleus	30.05	28.29
TraesCS3A01G102900.1	Wheat	nucleus, plastid	35.75	27.82
Solyc04g014360.2.1	Tomato	nucleus	37.31	26.57
TraesCS3A01G142900.1	Wheat	nucleus	35.75	26.54
TraesCS5A01G466300.1	Wheat	plastid	33.68	26.0
KRH69661	Soybean	mitochondrion	27.98	25.47
Bra010635.1-P	Field mustard	plastid	28.5	24.55
TraesCS5A01G230500.1	Wheat	nucleus	40.41	23.28
AT4G38070.1	Thale cress	plastid	29.02	21.88
TraesCS3A01G102600.1	Wheat	extracellular, mitochondrion	36.79	21.26
TraesCS4A01G087000.1	Wheat	nucleus	39.38	18.72
CDY52514	Canola	cytosol	28.5	3.82

Protein Annotations

EnsemblPlants:TraesCS5A01G245600.1	EnsemblPlantsGene:TraesCS5A01G245600	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF185	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:458966764..458967942

Molecular Weight (calculated)

20786.7 Da

IEP (calculated)

10.704

GRAVY (calculated)

-0.424

Length

193 amino acids

Sequence
(BLAST)

001: MDDQRSTPAR GARTSRSHSE AERKRRQRIN THLATLRSLL PSASQMDKAA LLGEVVRHVR ELRGDADGGA VAGVAVPGES DEVGVEEERW DARESAKRVR
101: AWVCCADRPG LMSELGRAVR SVSARAVRAE IATVGGRTRS VLELEAGQAA GASRPALHAA LRAVLLSRED ELLAVEGYKR QRFSALISQG LGS

Best Arabidopsis Sequence Match ( AT4G38070.1 )
(BLAST)

001: MVLLHHVSLS HYQNSSSLFS SSSESILCLF LVLCVMQLEQ GMRPISRCYN PTAYSTTMGR SFFAGAATSS KLFSRGFSVT KPKSKTESKE VAAKKHSDAE
101: RRRRLRINSQ FATLRTILPN LVKQDKASVL GETVRYFNEL KKMVQDIPTT PSLEDNLRLD HCNNNRDLAR VVFSCSDREG LMSEVAESMK AVKAKAVRAE
201: IMTVGGRTKC ALFVQGVNGN EGLVKLKKSL KLVVNGKSSS EAKNNNNGGS LLIQQQ

Arabidopsis Description

BHLH131Transcription factor bHLH131 [Source:UniProtKB/Swiss-Prot;Acc:P0CB25]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.