Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G217700.1 | Wheat | nucleus | 99.26 | 99.26 |
| HORVU4Hr1G061760.1 | Barley | nucleus | 97.54 | 98.51 |
| TraesCS4B01G217400.1 | Wheat | nucleus | 98.28 | 98.28 |
| Os03t0260600-01 | Rice | nucleus | 82.76 | 82.15 |
| Zm00001d028504_P001 | Maize | nucleus | 72.41 | 75.19 |
| GSMUA_Achr6P30610_001 | Banana | nucleus | 34.98 | 74.35 |
| GSMUA_Achr7P07280_001 | Banana | nucleus | 34.48 | 72.54 |
| OQU92884 | Sorghum | nucleus | 79.31 | 72.36 |
| Solyc04g006990.2.1 | Tomato | nucleus | 32.02 | 61.61 |
| Bra025158.1-P | Field mustard | nucleus | 31.28 | 56.95 |
| Solyc05g009880.2.1 | Tomato | nucleus | 40.15 | 54.33 |
| VIT_01s0011g02940.t01 | Wine grape | nucleus | 46.31 | 53.87 |
| PGSC0003DMT400002155 | Potato | nucleus | 40.89 | 53.21 |
| PGSC0003DMT400019294 | Potato | nucleus | 33.74 | 52.49 |
| KRH75497 | Soybean | nucleus | 47.54 | 51.33 |
| KRG92013 | Soybean | nucleus | 43.35 | 50.72 |
| KRH34774 | Soybean | nucleus | 44.09 | 50.71 |
| KRH70619 | Soybean | nucleus | 45.32 | 49.46 |
| CDY33592 | Canola | nucleus | 40.15 | 46.05 |
| CDX95989 | Canola | nucleus | 39.9 | 45.89 |
| Bra004338.1-P | Field mustard | nucleus | 39.9 | 45.76 |
| AT1G68810.1 | Thale cress | nucleus | 40.39 | 44.57 |
| CDY13580 | Canola | nucleus | 36.7 | 44.48 |
| CDY07364 | Canola | nucleus | 38.67 | 44.48 |
| Bra004015.1-P | Field mustard | nucleus | 38.67 | 44.48 |
| AT3G25710.1 | Thale cress | nucleus | 37.44 | 44.19 |
| CDX83546 | Canola | nucleus | 36.45 | 44.18 |
| CDX99756 | Canola | nucleus | 36.21 | 44.14 |
| Bra026510.1-P | Field mustard | nucleus | 36.21 | 43.88 |
| CDY04259 | Canola | nucleus | 38.18 | 43.79 |
| TraesCS5A01G230500.1 | Wheat | nucleus | 35.71 | 43.28 |
| TraesCS5A01G245600.1 | Wheat | nucleus | 18.72 | 39.38 |
| TraesCS5A01G466300.1 | Wheat | plastid | 23.89 | 38.8 |
| TraesCS2A01G472300.1 | Wheat | nucleus | 17.98 | 34.76 |
| TraesCS3A01G142900.1 | Wheat | nucleus | 21.18 | 33.08 |
| TraesCS3A01G102900.1 | Wheat | nucleus, plastid | 19.21 | 31.45 |
| TraesCS1A01G110400.1 | Wheat | plastid | 16.01 | 30.66 |
| TraesCS3A01G102600.1 | Wheat | extracellular, mitochondrion | 19.7 | 23.95 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G087000.1 | EnsemblPlantsGene:TraesCS4A01G087000 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF77 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | TIGR:cd04873 | MapMan:15.5.32 | : | : |
Description
No Description!
Coordinates
chr4A:+:91469852..91472478
Molecular Weight (calculated)
43389.3 Da
IEP (calculated)
5.810
GRAVY (calculated)
-0.427
Length
406 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAHGDRRRH RREEVGVLLD EEEEELEHHA RACGGATSGL VDQELGGCQE GGGGMVFEAS SSVGSVSATM GPPPIMCWPP LAPSLSPQEP LHGAIHHHHN
101: IGIGGQGPFF PLLPPLPQQP PPPPPFLADF YARRALQFAY DHSGGASSSS EPLGFGAGLY MGHHGSPVHG MMMPPPFGAS PFGDFGRMTA QEIMDAKALA
201: ASKSHSEAER RRRERINSHL ARLRSLLPNT TKTDKASLLA EVIQHVKELK RQTSEIREEA CPLPTEADEL TVDASSDEDG RLLVRASLCC DDRPDLLPDL
301: IRALKALRLR ALKAEITTLG GRVKNVLVVT EDDSIACDGD QQDEDGGMQA PMSPQHAVAS IQEALRAVME RTSSSSGAED SGGSASGGLK RQRTTSLSAI
401: LENRSI
101: IGIGGQGPFF PLLPPLPQQP PPPPPFLADF YARRALQFAY DHSGGASSSS EPLGFGAGLY MGHHGSPVHG MMMPPPFGAS PFGDFGRMTA QEIMDAKALA
201: ASKSHSEAER RRRERINSHL ARLRSLLPNT TKTDKASLLA EVIQHVKELK RQTSEIREEA CPLPTEADEL TVDASSDEDG RLLVRASLCC DDRPDLLPDL
301: IRALKALRLR ALKAEITTLG GRVKNVLVVT EDDSIACDGD QQDEDGGMQA PMSPQHAVAS IQEALRAVME RTSSSSGAED SGGSASGGLK RQRTTSLSAI
401: LENRSI
001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR
Arabidopsis Description
BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.