Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- plastid 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G072600.1 | Wheat | nucleus | 82.85 | 89.72 |
| TraesCS5D01G085300.1 | Wheat | nucleus | 87.23 | 86.91 |
| HORVU5Hr1G019040.1 | Barley | cytosol | 86.13 | 86.76 |
| Os12t0580700-01 | Rice | nucleus | 57.3 | 60.85 |
| KXG23810 | Sorghum | cytosol | 55.47 | 58.24 |
| Zm00001d030843_P001 | Maize | nucleus | 41.61 | 46.53 |
| TraesCS4B01G077700.1 | Wheat | cytosol | 37.23 | 38.93 |
| CDY16531 | Canola | nucleus | 21.17 | 25.89 |
| CDY32837 | Canola | nucleus | 21.17 | 25.89 |
| Bra014221.1-P | Field mustard | nucleus | 20.8 | 25.79 |
| KRG91075 | Soybean | nucleus | 21.9 | 25.42 |
| TraesCS4B01G255400.1 | Wheat | nucleus | 25.18 | 25.0 |
| Bra039652.1-P | Field mustard | nucleus | 21.9 | 24.69 |
| CDY61552 | Canola | nucleus | 21.53 | 24.69 |
| KRH35698 | Soybean | nucleus | 21.9 | 24.39 |
| VIT_03s0091g00480.t01 | Wine grape | nucleus | 24.45 | 24.1 |
| GSMUA_Achr4P32570_001 | Banana | nucleus | 23.36 | 24.06 |
| CDY20854 | Canola | nucleus | 20.8 | 23.55 |
| PGSC0003DMT400066172 | Potato | nucleus | 23.36 | 22.22 |
| Solyc01g107290.2.1 | Tomato | nucleus | 22.26 | 22.1 |
| AT1G49850.1 | Thale cress | nucleus | 20.07 | 22.0 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G078400.1 | EnsemblPlantsGene:TraesCS5B01G078400 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF219 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr5B:+:94258966..94261577
Molecular Weight (calculated)
30293.6 Da
IEP (calculated)
6.960
GRAVY (calculated)
-0.599
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MPIASKLLYF QRRPSPAPPE PPDPRRRPCR GASASAPRRQ RSSAVSHHHH HHHHHHHKPV QDLVPANQRD GAKLMGCAGN KLEHIGVACS SSRLNRSVSD
101: HGRLPDAVQQ ARERLLQRLN SVDLSGRREN TSCSETIWAG VVTHPADIGV SNLSDSELGS LTSYFQSSVS ITTYNEVQET FPEPFSTVDK CMPVTPCTEP
201: IPVLQETACE DVEEGENTGP SLECSICLER CGEADGLMQL RCKHVFHSAC LERWLRSHGD CPYCRGSVLL TSDE
101: HGRLPDAVQQ ARERLLQRLN SVDLSGRREN TSCSETIWAG VVTHPADIGV SNLSDSELGS LTSYFQSSVS ITTYNEVQET FPEPFSTVDK CMPVTPCTEP
201: IPVLQETACE DVEEGENTGP SLECSICLER CGEADGLMQL RCKHVFHSAC LERWLRSHGD CPYCRGSVLL TSDE
001: MNSPQEISIL FFFIIFLDYV SAQSPPPPNL YATSDLFKPS LAIITGVFSI VFTLTFVLLV YAKCFHNDLR SETDSDGERI RHDRLWQGLF NRSSRFSGLD
101: KKAIESLPFF RFSALKGLKQ GLECSVCLSK FEDVEILRLL PKCRHAFHIG CIDQWLEQHA TCPLCRNRVN IEDDLSVLGN SSTSLRILNQ SETREEDSRL
201: EIYIEREEGT NDGSSRFSSF RKILKKSLLL EREGNENIDE KKLMHKFNHR IVVSDAVFKN RWSNITSSDL TFLTSEMLNS VSSDRFSSVD RVHRGNLRDK
301: EDMEMKRMLI KHKDSSRRTV SEITTVSREK AVGGSYRGST ASTSQNYAVT ATTEERRRRL WLPIARRTAQ WFVNREKSND LNTTRQNLNV
101: KKAIESLPFF RFSALKGLKQ GLECSVCLSK FEDVEILRLL PKCRHAFHIG CIDQWLEQHA TCPLCRNRVN IEDDLSVLGN SSTSLRILNQ SETREEDSRL
201: EIYIEREEGT NDGSSRFSSF RKILKKSLLL EREGNENIDE KKLMHKFNHR IVVSDAVFKN RWSNITSSDL TFLTSEMLNS VSSDRFSSVD RVHRGNLRDK
301: EDMEMKRMLI KHKDSSRRTV SEITTVSREK AVGGSYRGST ASTSQNYAVT ATTEERRRRL WLPIARRTAQ WFVNREKSND LNTTRQNLNV
Arabidopsis Description
ATL12Putative RING-H2 finger protein ATL12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL78]
SUBAcon: [endoplasmic reticulum,plasma membrane]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.