Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G425200.2 | Wheat | nucleus | 93.22 | 92.63 |
| TraesCS1B01G459600.2 | Wheat | plastid | 90.03 | 89.57 |
| HORVU1Hr1G092980.14 | Barley | plastid | 89.64 | 79.93 |
| Os05t0586400-01 | Rice | nucleus | 56.14 | 56.28 |
| KXG22639 | Sorghum | nucleus | 55.88 | 55.18 |
| Zm00001d009716_P001 | Maize | nucleus | 49.74 | 50.92 |
| TraesCS3D01G229400.1 | Wheat | nucleus | 45.78 | 44.92 |
| Bra037384.1-P | Field mustard | nucleus | 12.15 | 41.48 |
| CDX79176 | Canola | cytosol | 5.37 | 37.17 |
| CDX90032 | Canola | nucleus | 19.82 | 27.68 |
| CDY48504 | Canola | nucleus | 19.82 | 27.53 |
| CDY15177 | Canola | nucleus | 19.57 | 27.47 |
| CDX91876 | Canola | nucleus | 19.82 | 26.54 |
| Bra033264.1-P | Field mustard | nucleus | 19.69 | 26.51 |
| CDY67475 | Canola | nucleus | 19.57 | 25.89 |
| Bra000943.1-P | Field mustard | nucleus | 19.82 | 25.83 |
| VIT_15s0046g01270.t01 | Wine grape | nucleus | 24.94 | 24.97 |
| CDY42041 | Canola | cytosol | 20.59 | 24.92 |
| GSMUA_Achr3P25070_001 | Banana | vacuole | 21.74 | 24.57 |
| CDY07174 | Canola | nucleus | 19.95 | 24.53 |
| CDX80013 | Canola | nucleus | 20.59 | 24.21 |
| Bra004541.1-P | Field mustard | nucleus | 20.46 | 23.84 |
| VIT_02s0025g01190.t01 | Wine grape | nucleus | 25.7 | 23.67 |
| CDX71720 | Canola | cytosol | 22.12 | 23.38 |
| Bra007625.1-P | Field mustard | cytosol | 22.12 | 23.35 |
| CDY11374 | Canola | cytosol | 21.74 | 22.94 |
| AT3G61670.1 | Thale cress | nucleus | 22.63 | 22.41 |
| AT1G01440.1 | Thale cress | nucleus | 18.93 | 22.29 |
| AT4G01090.1 | Thale cress | nucleus | 20.33 | 22.27 |
| AT2G46380.1 | Thale cress | nucleus | 21.74 | 22.14 |
| TraesCS7D01G371500.1 | Wheat | nucleus | 23.27 | 22.01 |
| CDY11373 | Canola | cytosol | 20.46 | 21.83 |
| TraesCS7D01G343700.1 | Wheat | cytosol | 23.66 | 21.79 |
| KRG97141 | Soybean | nucleus | 23.66 | 20.31 |
| KRH68892 | Soybean | nucleus | 23.15 | 20.02 |
| KRH06502 | Soybean | nucleus | 22.63 | 19.84 |
| KRH47938 | Soybean | nucleus | 22.25 | 19.46 |
| Solyc01g095590.2.1 | Tomato | nucleus | 22.38 | 18.1 |
| Solyc08g082040.2.1 | Tomato | nucleus | 21.1 | 17.46 |
| PGSC0003DMT400032053 | Potato | nucleus | 20.97 | 17.34 |
| PGSC0003DMT400000290 | Potato | nucleus | 22.12 | 17.23 |
| KRG99688 | Soybean | cytosol | 0.77 | 8.82 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G434200.2 | EnsemblPlantsGene:TraesCS1D01G434200 | InterPro:Zinc_ribbon_12 | PANTHER:PTHR31105 | PANTHER:PTHR31105:SF8 | PFAM:PF11331 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr1D:+:483513002..483516784
Molecular Weight (calculated)
85992.7 Da
IEP (calculated)
8.836
GRAVY (calculated)
-0.922
Length
782 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSEPKEMKY RRRARAPEPG DYGQCGGGGG VVDWAALKQQ DPAELLRKLD EIRDQITRSC EAAGPRPADP PHRMGRGAVS MRHSHADPLP PPPGRGAPPE
101: YYRSSRHAGR YGQGGPPSSY DQRSVCDDRY ARQPSGRFRQ PRPEGQWEGY GYGGHHSSCQ CGQCVHGQRA MPPQEESIPM ARFFAGQQRP PYQFDRSASS
201: ISSEYDRRSV ASSLYSHLSM SKRRVEYFSK RADSFCRPTK GGAPFVVCSS CNQLLQLPPG KCTSPKQNQV QCGSCSEVVT LKLKGAKVHP VIPSSSFSVP
301: KSVRSSDRRA PQSSGWYPYE DDDTSSFGSY RQKQNFSDNL SQSSIGSYGS STSKERGPNK ISQVKPVSVS KSRFADSPKD ILCQGDADSQ VEASVIRTIS
401: PQAPVLEDKL VDPFSSQQND CSGGDQIKSK RYGLNSKGNF DVRGERIDVK CEQKSNESRK DGFSGETMKK TYGQKYLKQL NASCHDGHMG SKNTRKANSD
501: DSRSSSLEDE ATSKKYEEKS RQDDNNFEAQ GVNKRYDNCN KEGYNNDFGF DSITKTCEEE SVQDDYAKSL SSNCENAKGV AKNESSVSER TNTSSHVSSD
601: AGLDEIQSSA GKSGDSSFFG GFLKKGFKDL SLFNQSMDSV KVSINGHPIS ERALHKAEKK AGPVSPGSYW YDQRAGFWGV MGHECSGIIP PFIKEFSYSM
701: PKNCAGGNTG VLVNGRELHQ KDFDLLVKRG LQRFSEKSYT VDISGNVIDA ATGDKLRSLG KLAPTIEKMK RGFGMHVPEE IS
101: YYRSSRHAGR YGQGGPPSSY DQRSVCDDRY ARQPSGRFRQ PRPEGQWEGY GYGGHHSSCQ CGQCVHGQRA MPPQEESIPM ARFFAGQQRP PYQFDRSASS
201: ISSEYDRRSV ASSLYSHLSM SKRRVEYFSK RADSFCRPTK GGAPFVVCSS CNQLLQLPPG KCTSPKQNQV QCGSCSEVVT LKLKGAKVHP VIPSSSFSVP
301: KSVRSSDRRA PQSSGWYPYE DDDTSSFGSY RQKQNFSDNL SQSSIGSYGS STSKERGPNK ISQVKPVSVS KSRFADSPKD ILCQGDADSQ VEASVIRTIS
401: PQAPVLEDKL VDPFSSQQND CSGGDQIKSK RYGLNSKGNF DVRGERIDVK CEQKSNESRK DGFSGETMKK TYGQKYLKQL NASCHDGHMG SKNTRKANSD
501: DSRSSSLEDE ATSKKYEEKS RQDDNNFEAQ GVNKRYDNCN KEGYNNDFGF DSITKTCEEE SVQDDYAKSL SSNCENAKGV AKNESSVSER TNTSSHVSSD
601: AGLDEIQSSA GKSGDSSFFG GFLKKGFKDL SLFNQSMDSV KVSINGHPIS ERALHKAEKK AGPVSPGSYW YDQRAGFWGV MGHECSGIIP PFIKEFSYSM
701: PKNCAGGNTG VLVNGRELHQ KDFDLLVKRG LQRFSEKSYT VDISGNVIDA ATGDKLRSLG KLAPTIEKMK RGFGMHVPEE IS
001: MAESSTIEAR LVRCPKCKNL LQEPKDCPFF QCGGCGTVLC AKNKDREADL LSVKSVENRS KEIEVTSGSS EEESDSNASL RHQQDGQTET WDVHNDPSSK
101: MNVVDSGNND SQPGLDQIRK RTTKRCDLEG FRFSTSNYFT DSLSTDEAIE QDRAGLVRKL DKLKEQLVQP KEQQIPSSSS GFQKAPLRVF SSGRRIAGPS
201: YYQYYSEPEP PCLYNNNSDV SLHGPMHNPA NVPAYGDPHG FPMHERTLQP SHLHNSRQYI GNNGHDVFDT HPHNGMFHQS TCSCTHCYDP YHRASGSVFP
301: PSGLPDALRN PGFYPHERSF GFGTSLHSPR TFIPPGSQSP GPQLRGRCTS GFKDMRMNAV SRVHPSKPVS SSGGSRLIQP VAGGAPFINC INCFKLLKLP
401: EKIDSATRKK QRMRCGACSC VIDYSFVDKK LILSTDPASA RKPETHSRLR WETTANFSSD DYDNAAYEFH AMDRGSADVS TALVLISNTA QEMQITDATS
501: PSVSEDELSS DSSTVRKVNL ASPLHKQFEY SSINVRDRSG PRSQSSRSEQ DRVTLSKTAM RQNSMKEASV AIEMDVNDYS HNNEVSQDSA NDCTDDQGRT
601: KKGGFASIMK NSFKDLKKSI QNEGRSDVSI NGHPVAERLV KMAEKQAGPI RPGNYWYDYR AGFWGVLGSH CLGILPPFIE ELNYPMPENC AGGTTRVFVN
701: GRELHQKDLR LLTARGLPRD RDRSYTVYIS GRVIDEDTGE ELDSLGKLAP TVDKLKRGFG MRVPRRAT
101: MNVVDSGNND SQPGLDQIRK RTTKRCDLEG FRFSTSNYFT DSLSTDEAIE QDRAGLVRKL DKLKEQLVQP KEQQIPSSSS GFQKAPLRVF SSGRRIAGPS
201: YYQYYSEPEP PCLYNNNSDV SLHGPMHNPA NVPAYGDPHG FPMHERTLQP SHLHNSRQYI GNNGHDVFDT HPHNGMFHQS TCSCTHCYDP YHRASGSVFP
301: PSGLPDALRN PGFYPHERSF GFGTSLHSPR TFIPPGSQSP GPQLRGRCTS GFKDMRMNAV SRVHPSKPVS SSGGSRLIQP VAGGAPFINC INCFKLLKLP
401: EKIDSATRKK QRMRCGACSC VIDYSFVDKK LILSTDPASA RKPETHSRLR WETTANFSSD DYDNAAYEFH AMDRGSADVS TALVLISNTA QEMQITDATS
501: PSVSEDELSS DSSTVRKVNL ASPLHKQFEY SSINVRDRSG PRSQSSRSEQ DRVTLSKTAM RQNSMKEASV AIEMDVNDYS HNNEVSQDSA NDCTDDQGRT
601: KKGGFASIMK NSFKDLKKSI QNEGRSDVSI NGHPVAERLV KMAEKQAGPI RPGNYWYDYR AGFWGVLGSH CLGILPPFIE ELNYPMPENC AGGTTRVFVN
701: GRELHQKDLR LLTARGLPRD RDRSYTVYIS GRVIDEDTGE ELDSLGKLAP TVDKLKRGFG MRVPRRAT
Arabidopsis Description
Extra-large G-like protein, putative (DUF3133) [Source:UniProtKB/TrEMBL;Acc:Q0WVG1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.