Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G486400.2 | Wheat | nucleus | 98.41 | 98.41 |
| HORVU5Hr1G112420.6 | Barley | nucleus | 86.85 | 79.27 |
| Os03t0818300-01 | Rice | nucleus | 75.3 | 76.52 |
| Zm00001d034627_P002 | Maize | nucleus | 75.7 | 76.0 |
| EER90633 | Sorghum | nucleus | 75.3 | 75.6 |
| KRH38049 | Soybean | nucleus | 64.54 | 68.07 |
| VIT_08s0105g00360.t01 | Wine grape | nucleus | 65.74 | 67.9 |
| KRH65724 | Soybean | nucleus | 64.54 | 67.78 |
| GSMUA_Achr10P... | Banana | nucleus | 64.94 | 67.36 |
| VIT_13s0067g01000.t01 | Wine grape | nucleus | 64.54 | 67.22 |
| PGSC0003DMT400059399 | Potato | nucleus | 64.14 | 66.81 |
| PGSC0003DMT400028638 | Potato | nucleus | 63.74 | 66.67 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 64.14 | 66.53 |
| KRH00242 | Soybean | nucleus | 63.35 | 66.53 |
| KRH49390 | Soybean | nucleus | 63.35 | 66.53 |
| Solyc09g005360.2.1 | Tomato | nucleus | 63.74 | 66.39 |
| PGSC0003DMT400049364 | Potato | nucleus | 63.35 | 66.25 |
| Solyc10g076690.1.1 | Tomato | nucleus | 63.35 | 66.25 |
| Solyc10g085180.1.1 | Tomato | nucleus | 62.95 | 65.83 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 62.95 | 65.29 |
| AT3G11200.1 | Thale cress | nucleus | 61.75 | 63.01 |
| CDX73886 | Canola | nucleus | 60.96 | 62.45 |
| CDY00726 | Canola | nucleus | 60.56 | 62.04 |
| CDY36305 | Canola | cytosol | 61.75 | 62.0 |
| AT5G05610.1 | Thale cress | nucleus | 59.36 | 61.83 |
| CDY08544 | Canola | nucleus | 60.56 | 61.54 |
| Bra034860.1-P | Field mustard | nucleus | 60.56 | 61.54 |
| Bra034169.1-P | Field mustard | nucleus | 60.96 | 61.2 |
| KRH56367 | Soybean | peroxisome | 52.99 | 60.45 |
| CDY01002 | Canola | nucleus | 60.16 | 60.4 |
| Solyc06g051420.2.1 | Tomato | nucleus | 57.77 | 59.18 |
| CDX70142 | Canola | cytosol | 56.57 | 59.17 |
| TraesCS1B01G129400.1 | Wheat | nucleus | 60.16 | 58.75 |
| Bra009121.1-P | Field mustard | nucleus | 56.18 | 58.75 |
| KRH69940 | Soybean | peroxisome | 51.39 | 58.64 |
| HORVU5Hr1G059130.2 | Barley | nucleus | 34.66 | 58.0 |
| CDX98851 | Canola | nucleus | 55.38 | 57.92 |
| Bra001393.1-P | Field mustard | nucleus | 56.97 | 57.2 |
| TraesCS4B01G088200.1 | Wheat | nucleus | 57.37 | 56.69 |
| TraesCS3B01G437100.1 | Wheat | cytosol | 55.38 | 52.85 |
| TraesCS1B01G272800.3 | Wheat | peroxisome | 53.78 | 51.33 |
| TraesCS2B01G198500.2 | Wheat | nucleus | 55.78 | 51.28 |
| CDY36322 | Canola | cytosol, plasma membrane, plastid | 55.38 | 48.26 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 33.47 | 38.36 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 33.07 | 37.9 |
| TraesCS2B01G329700.1 | Wheat | nucleus | 42.23 | 37.46 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0042393 | InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 |
| PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF96 | SMART:SM00249 | SUPFAM:SSF57903 | EnsemblPlantsGene:TraesCS5B01G486600 |
| EnsemblPlants:TraesCS5B01G486600.1 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD |
| TIGR:cd15613 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:657884023..657887758
Molecular Weight (calculated)
28399.1 Da
IEP (calculated)
6.311
GRAVY (calculated)
-0.716
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: METARAPAAP ATSRPRTVEA IFRDFNARRA GLVRALTSDV DDFFDSCDPD KENLCLYGHP DGTWEVSLPA EEVPPELPEP ALGINFARNG MNRRDWLSLV
101: AVHSDSWLLS VAFFFGAPLT ANERKRLFSM INDLPNVYES MVGRKHRDRS GVDSSGKSRH SSKPKQRTDD VRPKNSRAVA REEDEDEDEE EHSETFCGSC
201: TGIYNASEFW IGCDICERWF HGKCVRITPA KADHIKHYKC PECSSSKKMR Q
101: AVHSDSWLLS VAFFFGAPLT ANERKRLFSM INDLPNVYES MVGRKHRDRS GVDSSGKSRH SSKPKQRTDD VRPKNSRAVA REEDEDEDEE EHSETFCGSC
201: TGIYNASEFW IGCDICERWF HGKCVRITPA KADHIKHYKC PECSSSKKMR Q
001: MAAAAVSSNP RTVEEIFKDY SARRAALLRA LTKDVDDFYS QCDPEKENLC LYGHPNESWE VNLPAEEVPP ELPEPALGIN FARDGMQRKD WLSLVAVHSD
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ
Arabidopsis Description
AL2PHD finger protein ALFIN-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRM4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.