Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G11200.1 | CDX81645 | AT1G14510.1 | 21798944 |
| AT3G11200.1 | CDX84026 | AT1G14510.1 | 21798944 |
| AT3G11200.1 | CDX96851 | AT1G14510.1 | 21798944 |
| AT3G11200.1 | CDY53545 | AT1G14510.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08544 | Canola | nucleus | 94.4 | 95.55 |
| CDY00726 | Canola | nucleus | 93.2 | 95.1 |
| CDX73886 | Canola | nucleus | 92.8 | 94.69 |
| CDY01002 | Canola | nucleus | 94.4 | 94.4 |
| AT3G11200.1 | Thale cress | nucleus | 92.0 | 93.5 |
| CDX70142 | Canola | cytosol | 78.0 | 81.25 |
| PGSC0003DMT400059399 | Potato | nucleus | 76.4 | 79.25 |
| CDX98851 | Canola | nucleus | 76.0 | 79.17 |
| VIT_08s0105g00360.t01 | Wine grape | nucleus | 76.4 | 78.6 |
| CDY36322 | Canola | cytosol, plasma membrane, plastid | 90.0 | 78.12 |
| KRH38049 | Soybean | nucleus | 74.0 | 77.73 |
| KRH65724 | Soybean | nucleus | 73.6 | 76.99 |
| KRH49390 | Soybean | nucleus | 72.0 | 75.31 |
| KRH00242 | Soybean | nucleus | 72.0 | 75.31 |
| PGSC0003DMT400049364 | Potato | nucleus | 72.0 | 75.0 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 71.6 | 73.97 |
| GSMUA_Achr10P... | Banana | nucleus | 71.6 | 73.97 |
| CDY17594 | Canola | cytosol | 34.4 | 72.88 |
| PGSC0003DMT400028638 | Potato | nucleus | 69.6 | 72.5 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 69.6 | 71.9 |
| Solyc06g051420.2.1 | Tomato | nucleus | 70.4 | 71.84 |
| KRH56367 | Soybean | peroxisome | 60.0 | 68.18 |
| Os07t0233300-01 | Rice | nucleus | 66.0 | 67.62 |
| KRH69940 | Soybean | peroxisome | 59.2 | 67.27 |
| OQU88744 | Sorghum | cytosol | 64.0 | 66.12 |
| Zm00001d034627_P002 | Maize | nucleus | 64.8 | 64.8 |
| Zm00001d005185_P001 | Maize | nucleus | 62.4 | 64.73 |
| HORVU2Hr1G052960.2 | Barley | cytosol | 63.6 | 64.63 |
| EES00286 | Sorghum | nucleus | 61.6 | 63.64 |
| Os03t0818300-01 | Rice | nucleus | 62.8 | 63.56 |
| CDY51845 | Canola | cytosol | 17.6 | 62.86 |
| EER90633 | Sorghum | nucleus | 62.8 | 62.8 |
| TraesCS5B01G486600.1 | Wheat | nucleus | 62.0 | 61.75 |
| CDY12340 | Canola | cytosol, nucleus, plastid | 62.4 | 61.42 |
| CDY70751 | Canola | cytosol | 62.0 | 61.02 |
| CDX87962 | Canola | cytosol, nucleus, plastid | 62.0 | 61.02 |
| TraesCS5D01G486400.2 | Wheat | nucleus | 61.2 | 60.96 |
| Zm00001d010834_P001 | Maize | nucleus | 61.6 | 60.87 |
| CDX92458 | Canola | cytosol, nucleus, plastid | 62.4 | 60.7 |
| OQU77499 | Sorghum | nucleus | 61.2 | 60.47 |
| CDY16540 | Canola | cytosol | 63.2 | 60.31 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 58.8 | 60.25 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 58.8 | 60.25 |
| CDY19781 | Canola | cytosol | 60.8 | 59.14 |
| CDY03049 | Canola | cytosol | 57.6 | 58.78 |
| TraesCS1B01G129400.1 | Wheat | nucleus | 60.4 | 58.75 |
| TraesCS1D01G111700.1 | Wheat | nucleus | 60.4 | 58.75 |
| TraesCS1A01G110200.1 | Wheat | nucleus | 60.4 | 58.75 |
| CDY53545 | Canola | cytosol | 56.8 | 58.44 |
| CDX81645 | Canola | cytosol | 56.8 | 58.44 |
| CDX84026 | Canola | nucleus | 58.4 | 58.4 |
| CDX96851 | Canola | cytosol | 58.4 | 58.4 |
| CDX87061 | Canola | cytosol | 60.0 | 58.37 |
| CDY05535 | Canola | cytosol, nucleus, plastid | 58.8 | 57.87 |
| CDY52629 | Canola | nucleus | 60.4 | 57.85 |
| CDX88221 | Canola | nucleus | 60.0 | 57.47 |
| CDY24988 | Canola | cytosol, nucleus, plastid | 57.2 | 57.2 |
| Zm00001d037537_P001 | Maize | nucleus | 58.0 | 56.2 |
| CDY65375 | Canola | nucleus | 53.6 | 54.92 |
| CDY45267 | Canola | nucleus | 44.8 | 54.9 |
| OQU88643 | Sorghum | extracellular, golgi, mitochondrion | 26.0 | 53.72 |
| HORVU5Hr1G112420.6 | Barley | nucleus | 56.4 | 51.27 |
| CDY17593 | Canola | cytosol | 23.6 | 50.0 |
| HORVU1Hr1G024210.1 | Barley | nucleus | 60.4 | 44.54 |
| CDX80967 | Canola | mitochondrion | 28.4 | 39.23 |
| CDY11330 | Canola | mitochondrion | 28.4 | 38.59 |
| Os05t0163100-01 | Rice | nucleus | 36.8 | 34.59 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 28.4 | 32.42 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 28.4 | 32.42 |
| HORVU5Hr1G059130.2 | Barley | nucleus | 18.8 | 31.33 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | GO:A0A078HD42 | UniProt:A0A078HD42 | InterPro:Alfin | EnsemblPlants:CDY36305 |
| ProteinID:CDY36305 | ProteinID:CDY36305.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042393 |
| GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00060280001 | InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 | PFAM:PF12165 |
| ScanProsite:PS01359 | PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF96 | SMART:SM00249 | SUPFAM:SSF57903 |
| UniParc:UPI0004EE8D79 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
BnaA01g31130DBnaA01g31130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HD42]
Coordinates
chrLK032372:-:257962..260262
Molecular Weight (calculated)
28267.1 Da
IEP (calculated)
4.999
GRAVY (calculated)
-0.750
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAVSSNPR TVEEIFKDFT SRRAALLRAL TKDVDDFYSQ CDPEKENLCL YGHPNESWEV NLPAEEVPPE LPEPALGINF ARDGMQRKDW LSLVAVHSDC
101: WLLSVSFYFG ARLNRNERKR LFSLINDLPT LFDVVTGRKP IKDIKPSSDS GSKSRNGGTK RSIEGQPKST TPKLMEERYE EEDDEEEEDE HGDTLCGSCG
201: GNYTQDEFWI GCDVCERWYH GKCVKITPAK ADSIKQYKCP PCCAKKGGRQ
101: WLLSVSFYFG ARLNRNERKR LFSLINDLPT LFDVVTGRKP IKDIKPSSDS GSKSRNGGTK RSIEGQPKST TPKLMEERYE EEDDEEEEDE HGDTLCGSCG
201: GNYTQDEFWI GCDVCERWYH GKCVKITPAK ADSIKQYKCP PCCAKKGGRQ
001: MAAAAVSSNP RTVEEIFKDY SARRAALLRA LTKDVDDFYS QCDPEKENLC LYGHPNESWE VNLPAEEVPP ELPEPALGIN FARDGMQRKD WLSLVAVHSD
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ
Arabidopsis Description
AL2PHD finger protein ALFIN-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRM4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.