Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036568.1-P | Field mustard | cytosol | 99.22 | 99.22 |
| CDY19781 | Canola | cytosol | 99.22 | 99.22 |
| CDX88221 | Canola | nucleus | 95.33 | 93.87 |
| CDY52629 | Canola | nucleus | 94.55 | 93.1 |
| AT5G26210.1 | Thale cress | nucleus | 90.66 | 91.37 |
| CDY24988 | Canola | cytosol, nucleus, plastid | 82.88 | 85.2 |
| CDY05535 | Canola | cytosol, nucleus, plastid | 82.49 | 83.46 |
| VIT_11s0016g01500.t01 | Wine grape | nucleus | 81.32 | 82.94 |
| CDY51845 | Canola | cytosol | 21.4 | 78.57 |
| CDY17594 | Canola | cytosol | 35.41 | 77.12 |
| GSMUA_Achr8P30680_001 | Banana | nucleus | 72.76 | 74.5 |
| CDY70751 | Canola | cytosol | 73.15 | 74.02 |
| CDY16540 | Canola | cytosol | 74.32 | 72.9 |
| CDX92458 | Canola | cytosol, nucleus, plastid | 71.98 | 71.98 |
| CDY12340 | Canola | cytosol, nucleus, plastid | 70.82 | 71.65 |
| CDX87962 | Canola | cytosol, nucleus, plastid | 70.04 | 70.87 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 66.54 | 70.08 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 66.54 | 70.08 |
| Os07t0608400-01 | Rice | nucleus | 74.71 | 69.06 |
| CDY03049 | Canola | cytosol | 64.59 | 67.76 |
| CDX84026 | Canola | nucleus | 65.76 | 67.6 |
| VIT_11s0016g01630.t01 | Wine grape | plastid | 26.46 | 67.33 |
| CDX96851 | Canola | cytosol | 64.98 | 66.8 |
| TraesCS2D01G179400.2 | Wheat | nucleus | 70.43 | 66.3 |
| TraesCS2B01G198500.2 | Wheat | nucleus | 70.43 | 66.3 |
| TraesCS2A01G172100.2 | Wheat | nucleus | 70.43 | 66.3 |
| CDX81645 | Canola | cytosol | 61.87 | 65.43 |
| EER97523 | Sorghum | nucleus | 68.48 | 65.43 |
| CDY53545 | Canola | cytosol | 61.48 | 65.02 |
| CDY45267 | Canola | nucleus | 50.19 | 63.24 |
| CDY65375 | Canola | nucleus | 59.92 | 63.11 |
| CDY17593 | Canola | cytosol | 28.79 | 62.71 |
| CDX73886 | Canola | nucleus | 58.37 | 61.22 |
| CDY00726 | Canola | nucleus | 58.37 | 61.22 |
| CDY08544 | Canola | nucleus | 57.98 | 60.32 |
| CDY36305 | Canola | cytosol | 58.37 | 60.0 |
| CDY01002 | Canola | nucleus | 58.37 | 60.0 |
| CDX70142 | Canola | cytosol | 55.64 | 59.58 |
| CDX98851 | Canola | nucleus | 55.25 | 59.17 |
| HORVU2Hr1G031990.2 | Barley | nucleus | 69.26 | 58.75 |
| Zm00001d022110_P002 | Maize | nucleus | 67.7 | 55.24 |
| CDY36322 | Canola | cytosol, plasma membrane, plastid | 52.53 | 46.88 |
| CDX80967 | Canola | mitochondrion | 26.46 | 37.57 |
| CDY11330 | Canola | mitochondrion | 26.46 | 36.96 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 28.79 | 33.79 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 28.79 | 33.79 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | GO:A0A078DCS0 | InterPro:Alfin | EnsemblPlants:CDX87061 | ProteinID:CDX87061 |
| ProteinID:CDX87061.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042393 |
| EnsemblPlantsGene:GSBRNA2T00145949001 | InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 |
| PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF98 | SMART:SM00249 | SUPFAM:SSF57903 | TMHMM:TMhelix |
| UniParc:UPI0004EEB89D | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
BnaC09g03760D
Coordinates
chrLK031849:+:240912..242893
Molecular Weight (calculated)
29209.9 Da
IEP (calculated)
4.602
GRAVY (calculated)
-0.870
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGGAYNPR TVEEVYRDFK GRRSGMIKAL TSDVQEFYRL CDPEKENLCL YGRPDEHWEV NLPAEEVPPE LPEPVLGINF ARDGMQEKDW LSLVAVHSDA
101: WLLAVAFFFG ARFGFDKADR KRLFNMMNDL PSIFEVVAGT AKKQSKEKSS VSNNSSNRSK SNSKRGSEPR PKLTKPEPKD EEEEEEEGVE EEEDEDDEQG
201: ETQCGACGES YAADEFWICC DLCENWFHGK CVKITPARAE HIKQYKCPSC SNKRARS
101: WLLAVAFFFG ARFGFDKADR KRLFNMMNDL PSIFEVVAGT AKKQSKEKSS VSNNSSNRSK SNSKRGSEPR PKLTKPEPKD EEEEEEEGVE EEEDEDDEQG
201: ETQCGACGES YAADEFWICC DLCENWFHGK CVKITPARAE HIKQYKCPSC SNKRARS
001: MEAGGAYNPR TVEEVFRDFK GRRAGMIKAL TTDVQEFFRL CDPEKENLCL YGHPNEHWEV NLPAEEVPPE LPEPVLGINF ARDGMAEKDW LSLVAVHSDA
101: WLLAVAFFFG ARFGFDKADR KRLFNMVNDL PTIFEVVAGT AKKQGKDKSS VSNNSSNRSK SSSKRGSESR AKFSKPEPKD DEEEEEEGVE EEDEDEQGET
201: QCGACGESYA ADEFWICCDL CEMWFHGKCV KITPARAEHI KQYKCPSCSN KRARS
101: WLLAVAFFFG ARFGFDKADR KRLFNMVNDL PTIFEVVAGT AKKQGKDKSS VSNNSSNRSK SSSKRGSESR AKFSKPEPKD DEEEEEEGVE EEDEDEQGET
201: QCGACGESYA ADEFWICCDL CEMWFHGKCV KITPARAEHI KQYKCPSCSN KRARS
Arabidopsis Description
AL4AL4 [Source:UniProtKB/TrEMBL;Acc:A0A178U9E8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.