Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02470.1 | CDY23260 | AT4G30860.1 | 21798944 |
| AT2G02470.1 | CDY36467 | AT4G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol | 79.66 | 77.69 |
| Zm00001d010241_P002 | Maize | cytosol | 79.66 | 58.02 |
| CDY03049 | Canola | cytosol | 98.31 | 47.35 |
| Bra024817.1-P | Field mustard | nucleus | 98.31 | 47.15 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 93.22 | 45.08 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 93.22 | 45.08 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 94.92 | 43.75 |
| Solyc01g102760.2.1 | Tomato | nucleus | 87.29 | 41.53 |
| PGSC0003DMT400047018 | Potato | nucleus | 86.44 | 41.13 |
| Solyc01g102750.2.1 | Tomato | nucleus | 86.44 | 40.96 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 87.29 | 40.71 |
| KRH51269 | Soybean | nucleus | 86.44 | 40.64 |
| KRH01887 | Soybean | nucleus | 86.44 | 40.48 |
| CDX81645 | Canola | cytosol | 82.2 | 39.92 |
| CDY53545 | Canola | cytosol | 82.2 | 39.92 |
| CDX84026 | Canola | nucleus | 83.05 | 39.2 |
| CDX96851 | Canola | cytosol | 83.05 | 39.2 |
| GSMUA_Achr10P... | Banana | nucleus | 83.05 | 38.58 |
| GSMUA_Achr3P16750_001 | Banana | nucleus | 82.2 | 38.34 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 83.05 | 38.28 |
| EES08261 | Sorghum | nucleus | 82.2 | 38.19 |
| TraesCS4A01G227900.1 | Wheat | peroxisome | 82.2 | 38.19 |
| TraesCS4B01G088200.1 | Wheat | nucleus | 82.2 | 38.19 |
| TraesCS4D01G085300.1 | Wheat | peroxisome | 82.2 | 38.19 |
| GSMUA_Achr11P... | Banana | nucleus | 81.36 | 38.1 |
| GSMUA_Achr2P05660_001 | Banana | nucleus | 81.36 | 37.94 |
| Os11t0244800-01 | Rice | nucleus | 81.36 | 37.8 |
| HORVU4Hr1G015060.3 | Barley | nucleus | 81.36 | 37.8 |
| GSMUA_Achr7P02940_001 | Banana | nucleus | 80.51 | 37.55 |
| GSMUA_Achr6P28820_001 | Banana | nucleus | 80.51 | 37.55 |
| EES05274 | Sorghum | nucleus | 80.51 | 37.11 |
| Os05t0419100-01 | Rice | nucleus | 80.51 | 36.82 |
| OQU78932 | Sorghum | nucleus | 80.51 | 36.68 |
| EES18243 | Sorghum | nucleus | 79.66 | 36.58 |
| Zm00001d038208_P001 | Maize | nucleus | 78.81 | 36.33 |
| KXG26388 | Sorghum | cytosol | 76.27 | 36.0 |
| CDX87962 | Canola | cytosol, nucleus, plastid | 77.12 | 35.83 |
| CDY12340 | Canola | cytosol, nucleus, plastid | 77.12 | 35.83 |
| CDY70751 | Canola | cytosol | 77.12 | 35.83 |
| CDY19781 | Canola | cytosol | 77.97 | 35.8 |
| Os04t0444900-01 | Rice | nucleus | 77.12 | 35.55 |
| Zm00001d041767_P002 | Maize | nucleus | 79.66 | 35.47 |
| CDX92458 | Canola | cytosol, nucleus, plastid | 77.12 | 35.41 |
| CDX87061 | Canola | cytosol | 77.12 | 35.41 |
| TraesCS3B01G437100.1 | Wheat | cytosol | 78.81 | 35.36 |
| TraesCS3D01G398800.2 | Wheat | cytosol | 78.81 | 35.36 |
| TraesCS3A01G403600.1 | Wheat | cytosol | 78.81 | 35.36 |
| CDY52629 | Canola | nucleus | 77.97 | 35.25 |
| CDY24988 | Canola | cytosol, nucleus, plastid | 74.58 | 35.2 |
| TraesCS1D01G262200.1 | Wheat | peroxisome | 77.97 | 35.11 |
| TraesCS1B01G272800.3 | Wheat | peroxisome | 77.97 | 34.98 |
| CDX88221 | Canola | nucleus | 77.12 | 34.87 |
| HORVU1Hr1G064250.4 | Barley | mitochondrion, nucleus, peroxisome | 77.97 | 34.85 |
| CDY65375 | Canola | nucleus | 72.03 | 34.84 |
| Os01t0887700-01 | Rice | nucleus | 79.66 | 34.56 |
| Os02t0564100-01 | Rice | nucleus | 77.97 | 34.46 |
| CDY36305 | Canola | cytosol | 72.88 | 34.4 |
| KXG33847 | Sorghum | nucleus | 74.58 | 34.38 |
| CDY16540 | Canola | cytosol | 76.27 | 34.35 |
| CDX73886 | Canola | nucleus | 71.19 | 34.29 |
| CDY00726 | Canola | nucleus | 71.19 | 34.29 |
| CDY05535 | Canola | cytosol, nucleus, plastid | 73.73 | 34.25 |
| CDY08544 | Canola | nucleus | 71.19 | 34.01 |
| Zm00001d042582_P001 | Maize | cytosol, mitochondrion, nucleus | 73.73 | 33.85 |
| CDX70142 | Canola | cytosol | 68.64 | 33.75 |
| Zm00001d016861_P003 | Maize | cytosol, nucleus, plastid | 80.51 | 33.69 |
| CDY01002 | Canola | nucleus | 71.19 | 33.6 |
| CDX98851 | Canola | nucleus | 67.8 | 33.33 |
| Zm00001d050816_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 80.51 | 33.1 |
| CDX80967 | Canola | mitochondrion | 49.15 | 32.04 |
| CDY11330 | Canola | mitochondrion | 49.15 | 31.52 |
| Zm00001d023962_P001 | Maize | nucleus | 79.66 | 30.52 |
| Zm00001d012196_P005 | Maize | nucleus | 73.73 | 30.31 |
| CDY36322 | Canola | cytosol, plasma membrane, plastid | 72.03 | 29.51 |
| TraesCS1A01G262200.1 | Wheat | peroxisome | 54.24 | 29.22 |
| CDY45267 | Canola | nucleus | 50.0 | 28.92 |
| Zm00001d025504_P001 | Maize | nucleus | 58.47 | 27.82 |
| HORVU3Hr1G090540.1 | Barley | nucleus | 78.81 | 26.57 |
| GSMUA_Achr10P... | Banana | nucleus | 54.24 | 24.62 |
| TraesCS2A01G312700.1 | Wheat | nucleus | 52.54 | 21.91 |
| TraesCS2D01G311200.1 | Wheat | nucleus | 50.85 | 21.2 |
| TraesCS2B01G329700.1 | Wheat | nucleus | 50.85 | 21.2 |
| Zm00001d025491_P002 | Maize | nucleus | 63.56 | 20.6 |
| HORVU2Hr1G077670.3 | Barley | nucleus | 51.69 | 17.18 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 27.97 | 15.07 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 27.97 | 15.07 |
| CDY51845 | Canola | cytosol | 0.85 | 1.43 |
| CDY17593 | Canola | cytosol | 0.85 | 0.85 |
| GSMUA_AchrUn_... | Banana | plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY17594 | EnsemblPlantsGene:GSBRNA2T00001798001 | GO:A0A078FWW5 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0042393 | InterPro:Alfin | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF60 | PFAM:PF12165 | ProteinID:CDY17594 |
| ProteinID:CDY17594.1 | SEG:seg | UniParc:UPI0004EE7367 | UniProt:A0A078FWW5 | MapMan:15.5.8 | : |
Description
BnaA06g34130DBnaA06g34130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FWW5]
Coordinates
chrLK032076:-:18180..19009
Molecular Weight (calculated)
13381.0 Da
IEP (calculated)
4.465
GRAVY (calculated)
-0.186
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGIITQHTP RTVEEVFSDF RGRRAGLIKA LTIDMVKFYQ TCDPEKENLC LYGLPNETWE VNLPAEEVPP ELPEPALGIN FARDGMQEKD WVSLVAVHSD
101: SWLLSVAFYF GARFGFGK
101: SWLLSVAFYF GARFGFGK
001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
Arabidopsis Description
AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.