Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17594 | Canola | cytosol | 35.55 | 77.12 |
| Os02t0564100-01 | Rice | nucleus | 72.27 | 69.29 |
| Os11t0244800-01 | Rice | nucleus | 65.62 | 66.14 |
| Solyc01g102760.2.1 | Tomato | nucleus | 64.06 | 66.13 |
| KXG26388 | Sorghum | cytosol | 64.06 | 65.6 |
| PGSC0003DMT400047018 | Potato | nucleus | 63.28 | 65.32 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 64.45 | 65.22 |
| KRH01887 | Soybean | nucleus | 64.06 | 65.08 |
| Solyc01g102750.2.1 | Tomato | nucleus | 63.28 | 65.06 |
| KRH51269 | Soybean | nucleus | 63.28 | 64.54 |
| Bra024817.1-P | Field mustard | nucleus | 61.33 | 63.82 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 60.55 | 63.52 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 60.55 | 63.52 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 60.55 | 63.52 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 63.28 | 63.28 |
| CDY03049 | Canola | cytosol | 59.77 | 62.45 |
| CDX84026 | Canola | nucleus | 60.16 | 61.6 |
| AT1G14510.1 | Thale cress | nucleus | 60.55 | 61.51 |
| CDY53545 | Canola | cytosol | 58.2 | 61.32 |
| CDX81645 | Canola | cytosol | 58.2 | 61.32 |
| Os05t0419100-01 | Rice | nucleus | 61.72 | 61.24 |
| Bra016698.1-P | Field mustard | cytosol | 59.77 | 61.2 |
| CDX96851 | Canola | cytosol | 59.77 | 61.2 |
| Bra026825.1-P | Field mustard | nucleus | 58.2 | 61.07 |
| Os07t0608400-01 | Rice | nucleus | 66.02 | 60.79 |
| CDY65375 | Canola | nucleus | 57.81 | 60.66 |
| CDY45267 | Canola | nucleus | 48.05 | 60.29 |
| Bra026210.1-P | Field mustard | nucleus | 58.59 | 60.0 |
| Os01t0887700-01 | Rice | nucleus | 63.28 | 59.56 |
| Os07t0233300-01 | Rice | nucleus | 55.47 | 58.2 |
| Os03t0818300-01 | Rice | nucleus | 52.73 | 54.66 |
| CDY17593 | Canola | cytosol | 25.0 | 54.24 |
| Zm00001d025504_P001 | Maize | nucleus | 51.17 | 52.82 |
| TraesCS2A01G312700.1 | Wheat | nucleus | 50.39 | 45.58 |
| TraesCS2B01G329700.1 | Wheat | nucleus | 50.0 | 45.23 |
| TraesCS2D01G311200.1 | Wheat | nucleus | 50.0 | 45.23 |
| GSMUA_Achr10P... | Banana | nucleus | 42.19 | 41.54 |
| Zm00001d025491_P002 | Maize | nucleus | 54.69 | 38.46 |
| HORVU2Hr1G077670.3 | Barley | nucleus | 48.05 | 34.65 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 27.73 | 32.42 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 27.73 | 32.42 |
| Os05t0163100-01 | Rice | nucleus | 32.81 | 31.58 |
| Os01t0158800-00 | Rice | plastid | 25.39 | 27.31 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | EntrezGene:4335954 | EMBL:AK063657 | InterPro:Alfin | ProteinID:BAF14811.1 |
| ProteinID:BAS89383.1 | ProteinID:CAD40971.2 | ProteinID:EAZ30864.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006325 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0042393 | GO:GO:0046872 | InterPro:IPR013083 | InterPro:IPR019787 | EnsemblPlantsGene:Os04g0444900 |
| EnsemblPlants:Os04t0444900-01 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 | PANTHER:PTHR12321 |
| PANTHER:PTHR12321:SF98 | UniProt:Q7XUW3 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI00001B127E | RefSeq:XP_015636109.1 |
| InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
Similar to Alfin-1. (Os04t0444900-01)
Coordinates
chr4:+:22189044..22191821
Molecular Weight (calculated)
28277.2 Da
IEP (calculated)
6.353
GRAVY (calculated)
-0.582
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGYGSVTI VHDARSPEDV FQDFCGRRSG IVKALTIEVE KFYKQCDPEK ENLCLYGLPN GTWAVTLPAD EVPPELPEPA LGINFARDGM QEKDWLSLIA
101: VHSDSWLLSV AFYFGARFGF DKKARERLFM MTSSLPTVFE VVSGGVNTQS KTANGSSKNK SGSKPPKRPN SDSKPQKQVQ AKYEEENGGR GNGGDEDQAE
201: TICGACGEAY ANGEFWICCD ICETWFHGKC VRITPAKAEH IKHYKCPGCS NKRTRE
101: VHSDSWLLSV AFYFGARFGF DKKARERLFM MTSSLPTVFE VVSGGVNTQS KTANGSSKNK SGSKPPKRPN SDSKPQKQVQ AKYEEENGGR GNGGDEDQAE
201: TICGACGEAY ANGEFWICCD ICETWFHGKC VRITPAKAEH IKHYKCPGCS NKRTRE
001: MEGGTAHYSP RTVEEVFRDF KGRRAGIIQA LTTDVEDFFQ QCDPEKQNLC LYGFPNEVWE VNLPAEEVPP ELPEPALGIN FARDGMQERN WLSLVAVHSD
101: AWLLSVSFYF GSRFGFDRAD RKRLFSMINE VPTVYEVVTG NAEKQTKEMP SSANQNGNRS KSNSKMRGLE SKSSKTIHAK DEEEGLELEE GEEEEDEDED
201: EHGETLCGAC GDNYASDEFW ICCDMCEKWF HGECVKITPA RAEHIKHYKC PTCSNKRARP
101: AWLLSVSFYF GSRFGFDRAD RKRLFSMINE VPTVYEVVTG NAEKQTKEMP SSANQNGNRS KSNSKMRGLE SKSSKTIHAK DEEEGLELEE GEEEEDEDED
201: EHGETLCGAC GDNYASDEFW ICCDMCEKWF HGECVKITPA RAEHIKHYKC PTCSNKRARP
Arabidopsis Description
AL5PHD finger protein ALFIN-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEM9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.