Factsheet for Os11t0244800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

nucleus: 19621931
nucleus: 24133045

msms PMID: 24133045 doi

DK Jaiswal, D Ray, MK Choudhary, P Subba, A Kumar, J Verma, R Kumar, A Datta, S Chakraborty, N Chakraborty

National Institute of Plant Genome Research, New Delhi, India.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES08261	Sorghum	nucleus	95.67	95.67
TraesCS4D01G085300.1	Wheat	peroxisome	95.28	95.28
TraesCS4A01G227900.1	Wheat	peroxisome	95.28	95.28
TraesCS4B01G088200.1	Wheat	nucleus	94.88	94.88
HORVU4Hr1G015060.3	Barley	nucleus	94.49	94.49
CDY17594	Canola	cytosol	37.8	81.36
Zm00001d041767_P002	Maize	nucleus	79.92	76.6
Solyc01g102760.2.1	Tomato	nucleus	74.02	75.81
PGSC0003DMT400047018	Potato	nucleus	73.62	75.4
Os05t0419100-01	Rice	nucleus	76.38	75.19
Solyc01g102750.2.1	Tomato	nucleus	73.62	75.1
KRH01887	Soybean	nucleus	74.02	74.6
KRH51269	Soybean	nucleus	73.23	74.1
VIT_12s0035g01980.t01	Wine grape	nucleus	73.23	73.52
CDY17436	Canola	cytosol, nucleus, plastid	69.69	72.54
Bra017415.1-P	Field mustard	cytosol, nucleus, plastid	69.69	72.54
CDY04130	Canola	cytosol, nucleus, plastid	69.69	72.54
Bra024817.1-P	Field mustard	nucleus	69.29	71.54
AT2G02470.1	Thale cress	cytosol, nucleus, plastid	71.65	71.09
AT1G14510.1	Thale cress	nucleus	70.47	71.03
Os01t0887700-01	Rice	nucleus	75.98	70.96
Os02t0564100-01	Rice	nucleus	74.41	70.79
CDY03049	Canola	cytosol	67.72	70.2
CDX96851	Canola	cytosol	68.11	69.2
Bra016698.1-P	Field mustard	cytosol	68.11	69.2
CDX84026	Canola	nucleus	68.11	69.2
CDY53545	Canola	cytosol	65.35	68.31
CDX81645	Canola	cytosol	65.35	68.31
Bra026825.1-P	Field mustard	nucleus	64.96	67.62
Zm00001d023962_P001	Maize	nucleus	81.89	67.53
Os04t0444900-01	Rice	nucleus	66.14	65.62
CDY17593	Canola	cytosol	30.32	65.25
Os07t0608400-01	Rice	nucleus	70.08	64.03
Bra026210.1-P	Field mustard	nucleus	62.99	64.0
CDY65375	Canola	nucleus	61.42	63.93
CDY45267	Canola	nucleus	50.79	63.24
Os07t0233300-01	Rice	nucleus	57.48	59.84
Os03t0818300-01	Rice	nucleus	55.91	57.49
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	28.35	32.88
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	28.35	32.88
Os05t0163100-01	Rice	nucleus	32.68	31.2
Os01t0158800-00	Rice	plastid	27.56	29.41

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	EntrezGene:4350183	ProteinID:AAX92933.1	ProteinID:AAX95841.1	ProteinID:ABA92392.2
EMBL:AK103215	InterPro:Alfin	ProteinID:BAF27962.1	ProteinID:BAT13403.1	ProteinID:EEE51908.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0042393
GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787	EnsemblPlantsGene:Os11g0244800	EnsemblPlants:Os11t0244800-01	PFAM:PF00628
PFAM:PF12165	ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF77	UniProt:Q2R837
SMART:SM00249	SUPFAM:SSF57903	UniParc:UPI0000D89A40	RefSeq:XP_015617482.1	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD
InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Similar to Alfin-1. (Os11t0244800-01)

Coordinates

chr11:-:7776681..7784137

Molecular Weight (calculated)

28545.3 Da

IEP (calculated)

5.134

GRAVY (calculated)

-0.871

Length

254 amino acids

Sequence
(BLAST)

001: MDGGGAHRTP EDVFRDFRAR RAGMIKALTT DVEKFYQQCD PEKENLCLYG LPNETWEVNL PAEEVPPELP EPALGINFAR DGMDEKDWLS LVAVHSDTWL
101: LAVAFYFGAR FGFDKESRKR LFSMINNLPT IYEVVTGTAK KQSKEKTPKT SGKSNKSGTK PSRQPEPNSR GPKMPPPKDE DDSGGEEEEE EEDHENTLCG
201: ACGDNYGQDE FWICCDACET WFHGKCVKIT PAKAEHIKHY KCPNCSSSSK RARA

Best Arabidopsis Sequence Match ( AT1G14510.1 )
(BLAST)

001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA

Arabidopsis Description

AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.