Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02470.1 | CDY23260 | AT4G30860.1 | 21798944 |
| AT2G02470.1 | CDY36467 | AT4G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17594 | Canola | cytosol | 47.35 | 98.31 |
| CDY17593 | Canola | cytosol | 46.94 | 97.46 |
| Bra024817.1-P | Field mustard | nucleus | 93.88 | 93.5 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 88.16 | 88.52 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 88.16 | 88.52 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 88.98 | 85.16 |
| CDX81645 | Canola | cytosol | 76.73 | 77.37 |
| KRH51269 | Soybean | nucleus | 79.18 | 77.29 |
| Solyc01g102760.2.1 | Tomato | nucleus | 77.96 | 77.02 |
| KRH01887 | Soybean | nucleus | 79.18 | 76.98 |
| GSMUA_AchrUn_... | Banana | cytosol | 37.96 | 76.86 |
| CDX84026 | Canola | nucleus | 78.37 | 76.8 |
| CDY53545 | Canola | cytosol | 75.92 | 76.54 |
| CDX96851 | Canola | cytosol | 77.55 | 76.0 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 78.37 | 75.89 |
| PGSC0003DMT400047018 | Potato | nucleus | 75.92 | 75.0 |
| Solyc01g102750.2.1 | Tomato | nucleus | 75.92 | 74.7 |
| CDY51845 | Canola | cytosol | 20.82 | 72.86 |
| Zm00001d010241_P002 | Maize | cytosol | 46.53 | 70.37 |
| GSMUA_Achr10P... | Banana | nucleus | 71.43 | 68.9 |
| EES08261 | Sorghum | nucleus | 71.43 | 68.9 |
| CDY65375 | Canola | nucleus | 68.57 | 68.85 |
| GSMUA_Achr3P16750_001 | Banana | nucleus | 70.2 | 67.98 |
| GSMUA_Achr2P05660_001 | Banana | nucleus | 70.2 | 67.98 |
| GSMUA_Achr7P02940_001 | Banana | nucleus | 70.2 | 67.98 |
| GSMUA_Achr11P... | Banana | nucleus | 69.8 | 67.86 |
| TraesCS4B01G088200.1 | Wheat | nucleus | 70.2 | 67.72 |
| Os11t0244800-01 | Rice | nucleus | 70.2 | 67.72 |
| CDY45267 | Canola | nucleus | 56.33 | 67.65 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 70.61 | 67.58 |
| TraesCS4A01G227900.1 | Wheat | peroxisome | 69.8 | 67.32 |
| TraesCS4D01G085300.1 | Wheat | peroxisome | 69.8 | 67.32 |
| HORVU4Hr1G015060.3 | Barley | nucleus | 68.98 | 66.54 |
| Zm00001d038208_P001 | Maize | nucleus | 68.98 | 66.02 |
| GSMUA_Achr6P28820_001 | Banana | nucleus | 68.16 | 66.01 |
| EES18243 | Sorghum | nucleus | 68.98 | 65.76 |
| Os05t0419100-01 | Rice | nucleus | 68.98 | 65.5 |
| EES05274 | Sorghum | nucleus | 67.76 | 64.84 |
| CDY19781 | Canola | cytosol | 67.76 | 64.59 |
| CDX87061 | Canola | cytosol | 67.76 | 64.59 |
| TraesCS3D01G398800.2 | Wheat | cytosol | 68.98 | 64.26 |
| TraesCS1D01G262200.1 | Wheat | peroxisome | 68.57 | 64.12 |
| HORVU1Hr1G064250.4 | Barley | mitochondrion, nucleus, peroxisome | 68.98 | 64.02 |
| TraesCS1A01G262200.1 | Wheat | peroxisome | 57.14 | 63.93 |
| TraesCS1B01G272800.3 | Wheat | peroxisome | 68.57 | 63.88 |
| TraesCS3A01G403600.1 | Wheat | cytosol | 68.57 | 63.88 |
| TraesCS3B01G437100.1 | Wheat | cytosol | 68.57 | 63.88 |
| CDY12340 | Canola | cytosol, nucleus, plastid | 66.12 | 63.78 |
| CDX87962 | Canola | cytosol, nucleus, plastid | 66.12 | 63.78 |
| OQU78932 | Sorghum | nucleus | 67.35 | 63.71 |
| CDY52629 | Canola | nucleus | 67.76 | 63.6 |
| CDX92458 | Canola | cytosol, nucleus, plastid | 66.53 | 63.42 |
| CDX88221 | Canola | nucleus | 67.35 | 63.22 |
| CDY70751 | Canola | cytosol | 65.31 | 62.99 |
| KXG33847 | Sorghum | nucleus | 65.71 | 62.89 |
| CDY16540 | Canola | cytosol | 66.12 | 61.83 |
| CDY24988 | Canola | cytosol, nucleus, plastid | 62.86 | 61.6 |
| Zm00001d041767_P002 | Maize | nucleus | 66.53 | 61.51 |
| Zm00001d042582_P001 | Maize | cytosol, mitochondrion, nucleus | 64.49 | 61.48 |
| Os01t0887700-01 | Rice | nucleus | 68.16 | 61.4 |
| CDY05535 | Canola | cytosol, nucleus, plastid | 62.86 | 60.63 |
| Os04t0444900-01 | Rice | nucleus | 62.45 | 59.77 |
| Os02t0564100-01 | Rice | nucleus | 64.9 | 59.55 |
| CDX70142 | Canola | cytosol | 57.96 | 59.17 |
| Zm00001d016861_P003 | Maize | cytosol, nucleus, plastid | 67.76 | 58.87 |
| CDX73886 | Canola | nucleus | 58.78 | 58.78 |
| CDX98851 | Canola | nucleus | 57.55 | 58.75 |
| KXG26388 | Sorghum | cytosol | 59.59 | 58.4 |
| CDY00726 | Canola | nucleus | 58.37 | 58.37 |
| CDY08544 | Canola | nucleus | 58.37 | 57.89 |
| GSMUA_AchrUn_... | Banana | plastid | 30.2 | 57.81 |
| CDY36305 | Canola | cytosol | 58.78 | 57.6 |
| CDY01002 | Canola | nucleus | 58.37 | 57.2 |
| Zm00001d050816_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 66.94 | 57.14 |
| Zm00001d012196_P005 | Maize | nucleus | 63.27 | 54.01 |
| Zm00001d023962_P001 | Maize | nucleus | 66.12 | 52.6 |
| Zm00001d025504_P001 | Maize | nucleus | 48.98 | 48.39 |
| HORVU3Hr1G090540.1 | Barley | nucleus | 68.57 | 48.0 |
| CDY36322 | Canola | cytosol, plasma membrane, plastid | 53.47 | 45.49 |
| GSMUA_Achr10P... | Banana | nucleus | 44.49 | 41.92 |
| CDX80967 | Canola | mitochondrion | 27.76 | 37.57 |
| TraesCS2A01G312700.1 | Wheat | nucleus | 42.86 | 37.1 |
| CDY11330 | Canola | mitochondrion | 27.35 | 36.41 |
| TraesCS2D01G311200.1 | Wheat | nucleus | 42.04 | 36.4 |
| TraesCS2B01G329700.1 | Wheat | nucleus | 42.04 | 36.4 |
| Zm00001d025491_P002 | Maize | nucleus | 51.02 | 34.34 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 27.35 | 30.59 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 27.35 | 30.59 |
| HORVU2Hr1G077670.3 | Barley | nucleus | 43.27 | 29.86 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | GO:A0A078EQW1 | InterPro:Alfin | EnsemblPlants:CDY03049 | ProteinID:CDY03049 |
| ProteinID:CDY03049.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042393 | EnsemblPlantsGene:GSBRNA2T00115381001 |
| InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 | PFAM:PF12165 | PFscan:PS50016 | PANTHER:PTHR12321 |
| PANTHER:PTHR12321:SF60 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI0004EE25A5 | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD |
| InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
BnaC07g21780D
Coordinates
chrLK031939:-:616771..618917
Molecular Weight (calculated)
27450.3 Da
IEP (calculated)
4.961
GRAVY (calculated)
-0.542
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGIITQHTP RTVEEVFSDF RGRRAGLIKA LTFDMVKFYQ TCDPEKENLC LYGLPNETWE VNLPVEEVPP ELPEPALGIN FARDGMQEKD WVSLVAVHSD
101: SWLLSVAFYF GARFGFGKNE SLHCIVMIND LPTIFEVVTG NAKQSKDHSG TNNNNSKSKP SGLKVSKMMS SPPPKEEDES EDEEEEEQGA VCGACGDSYG
201: TDEFWICCDA CEKWFHGKCV KITPAKAEHI KHHKCPSCTN KRARP
101: SWLLSVAFYF GARFGFGKNE SLHCIVMIND LPTIFEVVTG NAKQSKDHSG TNNNNSKSKP SGLKVSKMMS SPPPKEEDES EDEEEEEQGA VCGACGDSYG
201: TDEFWICCDA CEKWFHGKCV KITPAKAEHI KHHKCPSCTN KRARP
001: MEGITHPIPR TVEEVFSDFR GRRAGLIKAL TNDMVKFYQT CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW VSLVAVHSDS
101: WLLSVAFYFG ARFGFGKNER KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKVAKMSSPP PKEEEEEEDE SEDESEDDEQ GAVCGACGDN
201: YGTDEFWICC DACEKWFHGK CVKITPAKAE HIKHYKCPTC SNKRARP
101: WLLSVAFYFG ARFGFGKNER KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKVAKMSSPP PKEEEEEEDE SEDESEDDEQ GAVCGACGDN
201: YGTDEFWICC DACEKWFHGK CVKITPAKAE HIKHYKCPTC SNKRARP
Arabidopsis Description
AL6AL6 [Source:UniProtKB/TrEMBL;Acc:A0A178VQJ7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.