Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G11200.1 | CDX81645 | AT1G14510.1 | 21798944 |
| AT3G11200.1 | CDX84026 | AT1G14510.1 | 21798944 |
| AT3G11200.1 | CDX96851 | AT1G14510.1 | 21798944 |
| AT3G11200.1 | CDY53545 | AT1G14510.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034860.1-P | Field mustard | nucleus | 97.2 | 98.38 |
| CDY08544 | Canola | nucleus | 97.2 | 98.38 |
| CDY00726 | Canola | nucleus | 94.8 | 96.73 |
| CDX73886 | Canola | nucleus | 94.4 | 96.33 |
| CDY36305 | Canola | cytosol | 94.4 | 94.4 |
| AT3G11200.1 | Thale cress | nucleus | 91.2 | 92.68 |
| CDX70142 | Canola | cytosol | 77.6 | 80.83 |
| PGSC0003DMT400059399 | Potato | nucleus | 76.0 | 78.84 |
| CDX98851 | Canola | nucleus | 75.6 | 78.75 |
| VIT_08s0105g00360.t01 | Wine grape | nucleus | 75.6 | 77.78 |
| KRH38049 | Soybean | nucleus | 73.2 | 76.89 |
| KRH65724 | Soybean | nucleus | 73.2 | 76.57 |
| KRH00242 | Soybean | nucleus | 72.0 | 75.31 |
| KRH49390 | Soybean | nucleus | 72.0 | 75.31 |
| CDY36322 | Canola | cytosol, plasma membrane, plastid | 86.4 | 75.0 |
| PGSC0003DMT400049364 | Potato | nucleus | 72.0 | 75.0 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 71.2 | 73.55 |
| GSMUA_Achr10P... | Banana | nucleus | 71.2 | 73.55 |
| PGSC0003DMT400028638 | Potato | nucleus | 69.2 | 72.08 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 69.2 | 71.49 |
| CDY17594 | Canola | cytosol | 33.6 | 71.19 |
| Solyc06g051420.2.1 | Tomato | nucleus | 68.8 | 70.2 |
| KRH56367 | Soybean | peroxisome | 59.6 | 67.73 |
| KRH69940 | Soybean | peroxisome | 58.8 | 66.82 |
| Os07t0233300-01 | Rice | nucleus | 65.2 | 66.8 |
| OQU88744 | Sorghum | cytosol | 63.2 | 65.29 |
| HORVU2Hr1G052960.2 | Barley | cytosol | 63.6 | 64.63 |
| Zm00001d005185_P001 | Maize | nucleus | 61.6 | 63.9 |
| EES00286 | Sorghum | nucleus | 61.2 | 63.22 |
| Os03t0818300-01 | Rice | nucleus | 62.4 | 63.16 |
| CDY51845 | Canola | cytosol | 17.6 | 62.86 |
| Zm00001d034627_P002 | Maize | nucleus | 62.8 | 62.8 |
| EER90633 | Sorghum | nucleus | 61.2 | 61.2 |
| Zm00001d010834_P001 | Maize | nucleus | 61.6 | 60.87 |
| CDY70751 | Canola | cytosol | 61.6 | 60.63 |
| CDY12340 | Canola | cytosol, nucleus, plastid | 61.6 | 60.63 |
| OQU77499 | Sorghum | nucleus | 61.2 | 60.47 |
| CDX87962 | Canola | cytosol, nucleus, plastid | 61.2 | 60.24 |
| TraesCS5D01G486400.2 | Wheat | nucleus | 60.4 | 60.16 |
| TraesCS5B01G486600.1 | Wheat | nucleus | 60.4 | 60.16 |
| CDX92458 | Canola | cytosol, nucleus, plastid | 61.6 | 59.92 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 58.4 | 59.84 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 58.4 | 59.84 |
| CDY16540 | Canola | cytosol | 62.0 | 59.16 |
| CDY19781 | Canola | cytosol | 60.8 | 59.14 |
| TraesCS1A01G110200.1 | Wheat | nucleus | 60.4 | 58.75 |
| TraesCS1B01G129400.1 | Wheat | nucleus | 60.4 | 58.75 |
| TraesCS1D01G111700.1 | Wheat | nucleus | 60.4 | 58.75 |
| CDY53545 | Canola | cytosol | 56.8 | 58.44 |
| CDY03049 | Canola | cytosol | 57.2 | 58.37 |
| CDX87061 | Canola | cytosol | 60.0 | 58.37 |
| CDY05535 | Canola | cytosol, nucleus, plastid | 59.2 | 58.27 |
| CDX81645 | Canola | cytosol | 56.4 | 58.02 |
| CDX84026 | Canola | nucleus | 58.0 | 58.0 |
| CDX96851 | Canola | cytosol | 58.0 | 58.0 |
| CDY24988 | Canola | cytosol, nucleus, plastid | 57.6 | 57.6 |
| CDY52629 | Canola | nucleus | 60.0 | 57.47 |
| CDX88221 | Canola | nucleus | 59.6 | 57.09 |
| Zm00001d037537_P001 | Maize | nucleus | 58.0 | 56.2 |
| CDY45267 | Canola | nucleus | 44.8 | 54.9 |
| CDY65375 | Canola | nucleus | 52.8 | 54.1 |
| OQU88643 | Sorghum | extracellular, golgi, mitochondrion | 26.0 | 53.72 |
| CDY17593 | Canola | cytosol | 24.0 | 50.85 |
| HORVU5Hr1G112420.6 | Barley | nucleus | 55.6 | 50.55 |
| HORVU1Hr1G024210.1 | Barley | nucleus | 60.4 | 44.54 |
| CDX80967 | Canola | mitochondrion | 28.8 | 39.78 |
| CDY11330 | Canola | mitochondrion | 28.8 | 39.13 |
| Os05t0163100-01 | Rice | nucleus | 36.4 | 34.21 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 27.6 | 31.51 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 27.6 | 31.51 |
| HORVU5Hr1G059130.2 | Barley | nucleus | 18.0 | 30.0 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | GO:A0A078EIM8 | InterPro:Alfin | EnsemblPlants:CDY01002 | ProteinID:CDY01002 |
| ProteinID:CDY01002.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042393 | EnsemblPlantsGene:GSBRNA2T00111022001 |
| InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 |
| PANTHER:PTHR12321 | PANTHER:PTHR12321:SF96 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI0004EAE768 | InterPro:Zinc_finger_PHD-type_CS |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
BnaC05g41980D
Coordinates
chrLK031923:-:576153..579039
Molecular Weight (calculated)
28333.1 Da
IEP (calculated)
4.817
GRAVY (calculated)
-0.784
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVSSNPRT VEEIFKDYTS RRSALLRALT KDVDDFYSQC DPEKENLCLY GHPNESWEVN LPAEEVPPEL PEPALGINFA RDGMQRKDWL SLVAVHSDCW
101: LLSVSFYFGA RLNRNERKRL FSLINDLPTL FDVVTGRKPI KDNKPSSDSG SKSRNGTKRS VEGQPKSTTP KLMEGSYEDD DEEEGEEEED EHGDTLCGIC
201: GGNYTQDEFW ICCDVCERWY HGKCVKITPA KADSIKQYKC PPCCAKKGRQ
101: LLSVSFYFGA RLNRNERKRL FSLINDLPTL FDVVTGRKPI KDNKPSSDSG SKSRNGTKRS VEGQPKSTTP KLMEGSYEDD DEEEGEEEED EHGDTLCGIC
201: GGNYTQDEFW ICCDVCERWY HGKCVKITPA KADSIKQYKC PPCCAKKGRQ
001: MAAAAVSSNP RTVEEIFKDY SARRAALLRA LTKDVDDFYS QCDPEKENLC LYGHPNESWE VNLPAEEVPP ELPEPALGIN FARDGMQRKD WLSLVAVHSD
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ
Arabidopsis Description
AL2PHD finger protein ALFIN-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRM4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.