Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d005185_P001 | Maize | nucleus | 90.91 | 91.29 |
| Os07t0233300-01 | Rice | nucleus | 78.93 | 78.28 |
| HORVU2Hr1G052960.2 | Barley | cytosol | 79.34 | 78.05 |
| EER90633 | Sorghum | nucleus | 74.79 | 72.4 |
| VIT_08s0105g00360.t01 | Wine grape | nucleus | 70.25 | 69.96 |
| KRH65724 | Soybean | nucleus | 69.01 | 69.87 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 69.83 | 69.83 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 69.83 | 69.83 |
| GSMUA_Achr10P... | Banana | nucleus | 69.83 | 69.83 |
| VIT_13s0067g01000.t01 | Wine grape | nucleus | 69.42 | 69.71 |
| KRH38049 | Soybean | nucleus | 67.77 | 68.91 |
| PGSC0003DMT400059399 | Potato | nucleus | 68.18 | 68.46 |
| Solyc10g076690.1.1 | Tomato | nucleus | 67.77 | 68.33 |
| PGSC0003DMT400049364 | Potato | nucleus | 67.77 | 68.33 |
| KRH49390 | Soybean | nucleus | 67.36 | 68.2 |
| Solyc09g005360.2.1 | Tomato | nucleus | 67.77 | 68.05 |
| KRH00242 | Soybean | nucleus | 66.94 | 67.78 |
| AT5G05610.1 | Thale cress | nucleus | 65.29 | 65.56 |
| AT3G11200.1 | Thale cress | nucleus | 66.53 | 65.45 |
| OQU88643 | Sorghum | extracellular, golgi, mitochondrion | 32.64 | 65.29 |
| PGSC0003DMT400028638 | Potato | nucleus | 64.46 | 65.0 |
| Bra034169.1-P | Field mustard | nucleus | 66.94 | 64.8 |
| Solyc10g085180.1.1 | Tomato | nucleus | 64.05 | 64.58 |
| CDY00726 | Canola | nucleus | 65.29 | 64.49 |
| CDX73886 | Canola | nucleus | 65.29 | 64.49 |
| CDY36305 | Canola | cytosol | 66.12 | 64.0 |
| Bra034860.1-P | Field mustard | nucleus | 65.29 | 63.97 |
| CDY08544 | Canola | nucleus | 65.29 | 63.97 |
| CDY01002 | Canola | nucleus | 65.29 | 63.2 |
| CDX70142 | Canola | cytosol | 60.33 | 60.83 |
| KRH56367 | Soybean | peroxisome | 54.96 | 60.45 |
| Bra009121.1-P | Field mustard | nucleus | 59.92 | 60.42 |
| Bra001393.1-P | Field mustard | nucleus | 61.57 | 59.6 |
| CDX98851 | Canola | nucleus | 59.09 | 59.58 |
| KRH69940 | Soybean | peroxisome | 53.31 | 58.64 |
| Solyc06g051420.2.1 | Tomato | nucleus | 58.68 | 57.96 |
| EES00286 | Sorghum | nucleus | 57.44 | 57.44 |
| OQU77499 | Sorghum | nucleus | 59.92 | 57.31 |
| EES05274 | Sorghum | nucleus | 56.2 | 53.12 |
| EES08261 | Sorghum | nucleus | 55.37 | 52.76 |
| EES18243 | Sorghum | nucleus | 55.37 | 52.14 |
| OQU78932 | Sorghum | nucleus | 55.37 | 51.74 |
| KXG26388 | Sorghum | cytosol | 53.31 | 51.6 |
| CDY36322 | Canola | cytosol, plasma membrane, plastid | 61.16 | 51.39 |
| KXG33847 | Sorghum | nucleus | 53.72 | 50.78 |
| EER97523 | Sorghum | nucleus | 53.72 | 48.33 |
| OQU77873 | Sorghum | cytosol | 38.02 | 36.95 |
| OQU77872 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 30.17 | 32.59 |
| KXG21847 | Sorghum | cytosol, plastid | 38.02 | 31.72 |
| KXG24231 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 33.47 | 30.0 |
| OQU77871 | Sorghum | cytosol | 13.22 | 28.07 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | UniProt:A0A1W0W2X2 | InterPro:Alfin | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0042393 | GO:GO:0046872 | InterPro:IPR013083 | InterPro:IPR019787 | EnsemblPlants:OQU88744 |
| ProteinID:OQU88744 | ProteinID:OQU88744.1 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 |
| PANTHER:PTHR12321 | PANTHER:PTHR12321:SF96 | SMART:SM00249 | EnsemblPlantsGene:SORBI_3002G083400 | SUPFAM:SSF57903 | UniParc:UPI0003C6AB4C |
| InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
hypothetical protein
Coordinates
chr2:-:8909408..8912907
Molecular Weight (calculated)
27270.9 Da
IEP (calculated)
6.848
GRAVY (calculated)
-0.712
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGPVSSAPR TVEDIYKDYT GRRAGLVRAL TSDVDEFYSM CDPEKENLCL YGHPNGGWEV SLPVEEVPPE MPEPALGINF ARDGMKRRDW LSLVAVHSDA
101: WVVSVAFFFA AKLNANERKR LFNMINEHPS VYETMTERKG RENKPGVDNS SKSRHSTKRS NDGKTKNSRV AVVEDGYGDD DEHSETLCGS CSGLYNSSEF
201: WIGCDICERW FHGKCVRITP AKAEQIKHYK CPDCSYKKSG RQ
101: WVVSVAFFFA AKLNANERKR LFNMINEHPS VYETMTERKG RENKPGVDNS SKSRHSTKRS NDGKTKNSRV AVVEDGYGDD DEHSETLCGS CSGLYNSSEF
201: WIGCDICERW FHGKCVRITP AKAEQIKHYK CPDCSYKKSG RQ
001: MAAAAVSSNP RTVEEIFKDY SARRAALLRA LTKDVDDFYS QCDPEKENLC LYGHPNESWE VNLPAEEVPP ELPEPALGIN FARDGMQRKD WLSLVAVHSD
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ
Arabidopsis Description
AL2PHD finger protein ALFIN-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRM4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.