Factsheet for Bra034860.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra016698.1-P
Bra026825.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11200.1	Bra016698.1-P	AT1G14510.1	21798944
AT3G11200.1	Bra026825.1-P	AT1G14510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08544	Canola	nucleus	100.0	100.0
CDY01002	Canola	nucleus	98.38	97.2
Bra034169.1-P	Field mustard	nucleus	95.55	94.4
AT3G11200.1	Thale cress	nucleus	91.9	92.28
Bra001393.1-P	Field mustard	nucleus	90.28	89.2
Bra009121.1-P	Field mustard	nucleus	77.73	80.0
PGSC0003DMT400059399	Potato	nucleus	76.52	78.42
VIT_08s0105g00360.t01	Wine grape	nucleus	75.71	76.95
KRH38049	Soybean	nucleus	73.68	76.47
KRH65724	Soybean	nucleus	73.68	76.15
KRH00242	Soybean	nucleus	72.47	74.9
KRH49390	Soybean	nucleus	72.47	74.9
PGSC0003DMT400049364	Potato	nucleus	72.47	74.58
GSMUA_Achr10P...	Banana	nucleus	72.06	73.55
GSMUA_Achr7P15530_001	Banana	nucleus	72.06	73.55
PGSC0003DMT400028638	Potato	nucleus	70.04	72.08
GSMUA_Achr2P18960_001	Banana	nucleus	70.04	71.49
Solyc06g051420.2.1	Tomato	nucleus	68.42	68.98
KRH56367	Soybean	peroxisome	60.32	67.73
Os07t0233300-01	Rice	nucleus	66.4	67.21
KRH69940	Soybean	peroxisome	59.51	66.82
OQU88744	Sorghum	cytosol	63.97	65.29
HORVU2Hr1G052960.2	Barley	cytosol	64.78	65.04
Zm00001d005185_P001	Maize	nucleus	61.94	63.49
EES00286	Sorghum	nucleus	61.94	63.22
Zm00001d034627_P002	Maize	nucleus	63.97	63.2
Bra006562.1-P	Field mustard	cytosol	17.81	62.86
Os03t0818300-01	Rice	nucleus	62.75	62.75
EER90633	Sorghum	nucleus	62.35	61.6
Zm00001d010834_P001	Maize	nucleus	62.75	61.26
OQU77499	Sorghum	nucleus	62.35	60.87
Bra034950.1-P	Field mustard	nucleus	62.35	60.63
TraesCS5D01G486400.2	Wheat	nucleus	61.54	60.56
TraesCS5B01G486600.1	Wheat	nucleus	61.54	60.56
Bra020107.1-P	Field mustard	cytosol	61.94	60.24
Bra024817.1-P	Field mustard	nucleus	59.92	60.16
Bra017415.1-P	Field mustard	cytosol, nucleus, plastid	59.11	59.84
TraesCS1D01G111700.1	Wheat	nucleus	61.13	58.75
TraesCS1A01G110200.1	Wheat	nucleus	61.13	58.75
Bra036568.1-P	Field mustard	cytosol	61.13	58.75
TraesCS1B01G129400.1	Wheat	nucleus	61.13	58.75
Bra020543.1-P	Field mustard	cytosol, nucleus, plastid	59.92	58.27
Bra016698.1-P	Field mustard	cytosol	58.7	58.0
Bra026825.1-P	Field mustard	nucleus	57.09	57.79
Bra009887.1-P	Field mustard	nucleus	59.92	56.7
Zm00001d037537_P001	Maize	nucleus	59.11	56.59
Bra002307.1-P	Field mustard	nucleus	62.35	54.61
OQU88643	Sorghum	extracellular, golgi, mitochondrion	26.32	53.72
Bra026210.1-P	Field mustard	nucleus	53.85	53.2
HORVU5Hr1G112420.6	Barley	nucleus	56.68	50.91
HORVU1Hr1G024210.1	Barley	nucleus	61.13	44.54
Bra005861.1-P	Field mustard	mitochondrion	28.74	39.01
Os05t0163100-01	Rice	nucleus	37.25	34.59
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	27.94	31.51
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	27.94	31.51
HORVU5Hr1G059130.2	Barley	nucleus	18.62	30.67

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	InterPro:Alfin	EnsemblPlantsGene:Bra034860	EnsemblPlants:Bra034860.1	EnsemblPlants:Bra034860.1-P
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0042393	GO:GO:0046872	InterPro:IPR013083
InterPro:IPR019787	UniProt:M4F1B4	PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359	PFscan:PS50016
PANTHER:PTHR12321	PANTHER:PTHR12321:SF96	SMART:SM00249	SUPFAM:SSF57903	UniParc:UPI0002547748	InterPro:Zinc_finger_PHD-type_CS
InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

AT3G11200 (E=5e-118) AL2 | AL2 (ALFIN-LIKE 2); DNA binding / methylated histone residue binding

Coordinates

chrA05:+:21764339..21766365

Molecular Weight (calculated)

28015.7 Da

IEP (calculated)

4.982

GRAVY (calculated)

-0.784

Length

247 amino acids

Sequence
(BLAST)

001: MAAVSSNPRT VEEIFKDYTS RRSALLRALT KDVDDFYSQC DPEKENLCLY GHPNESWEVN LPAEEVPPEL PEPALGINFA RDGMQRKDWL SLVAVHSDCW
101: LLSVSFYFGA RLNRNERKRL FSLINDLPTL FDVVTGRKPI KDNKPSSDSG SKSRNGTKRS IEGQPKSTTP KPMEGSYEDE DEDEEEDEHG DTLCGICGGN
201: YTQDEFWICC DVCERWYHGK CVKITPAKAD SIKQYKCPPC CAKKGRQ

Best Arabidopsis Sequence Match ( AT3G11200.1 )
(BLAST)

001: MAAAAVSSNP RTVEEIFKDY SARRAALLRA LTKDVDDFYS QCDPEKENLC LYGHPNESWE VNLPAEEVPP ELPEPALGIN FARDGMQRKD WLSLVAVHSD
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ

Arabidopsis Description

AL2PHD finger protein ALFIN-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.