Factsheet for Bra002307.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	peroxisome
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92458	Canola	cytosol, nucleus, plastid	88.65	97.28
CDY16540	Canola	cytosol	90.07	96.95
Bra006562.1-P	Field mustard	cytosol	22.34	90.0
Bra020107.1-P	Field mustard	cytosol	79.08	87.8
AT5G20510.1	Thale cress	cytosol	78.37	85.0
VIT_11s0016g01500.t01	Wine grape	nucleus	71.63	80.16
Bra034950.1-P	Field mustard	nucleus	71.28	79.13
KRH71913	Soybean	cytosol	25.89	76.84
GSMUA_Achr8P30680_001	Banana	nucleus	67.38	75.7
Bra009887.1-P	Field mustard	nucleus	68.44	73.95
Bra036568.1-P	Field mustard	cytosol	66.67	73.15
Bra020543.1-P	Field mustard	cytosol, nucleus, plastid	62.06	68.9
VIT_11s0016g01630.t01	Wine grape	plastid	24.47	68.32
Bra024817.1-P	Field mustard	nucleus	59.57	68.29
Os07t0608400-01	Rice	nucleus	66.31	67.27
Bra017415.1-P	Field mustard	cytosol, nucleus, plastid	57.8	66.8
TraesCS2A01G172100.2	Wheat	nucleus	64.54	66.67
TraesCS2B01G198500.2	Wheat	nucleus	64.54	66.67
TraesCS2D01G179400.2	Wheat	nucleus	64.54	66.67
Bra016698.1-P	Field mustard	cytosol	58.51	66.0
Bra026825.1-P	Field mustard	nucleus	54.96	63.52
EER97523	Sorghum	nucleus	59.57	62.45
Bra034169.1-P	Field mustard	nucleus	55.32	62.4
Bra034860.1-P	Field mustard	nucleus	54.61	62.35
HORVU2Hr1G031990.2	Barley	nucleus	63.83	59.41
Bra026210.1-P	Field mustard	nucleus	52.13	58.8
Bra009121.1-P	Field mustard	nucleus	49.65	58.33
Bra001393.1-P	Field mustard	nucleus	51.42	58.0
Zm00001d022110_P002	Maize	nucleus	59.57	53.33
Bra005861.1-P	Field mustard	mitochondrion	23.76	36.81
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	26.24	33.79
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	26.24	33.79

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	InterPro:Alfin	EnsemblPlantsGene:Bra002307	EnsemblPlants:Bra002307.1	EnsemblPlants:Bra002307.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0042393	GO:GO:0046872
InterPro:IPR013083	InterPro:IPR019787	UniProt:M4CDM6	PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359
PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF98	SMART:SM00249	SUPFAM:SSF57903	UniParc:UPI0002544C15
InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

AT5G20510 (E=3e-098) AL5 | AL5 (ALFIN-LIKE 5); DNA binding / methylated histone residue binding

Coordinates

chrA10:+:10389025..10391158

Molecular Weight (calculated)

31877.6 Da

IEP (calculated)

4.955

GRAVY (calculated)

-0.568

Length

282 amino acids

Sequence
(BLAST)

001: MEGGGGGAQY NPRTVEEVFR DFKGRRAAIL RALTTDVQEF FQQCDPEKDN LCLYGFPNEV WEVNLPAEEV PPELPEPALG INFARDGMME KDWLSLVAVH
101: SDAWLLSVSF FFGSKFGFDK VDRKRLFNMI NEVPTIFEVV TGTAKNQTKE KASSANQNGN RSKSNSKVRG LDGKSSKTIQ AMEEGGLEEE EEEKEKEEDE
201: EEHGETLCGA CGDNYASDEF WICCDMCEKW FHGTCVKITP ARAEHIKHYK CPSCSNKRAR PQNVLFHLLV LAIYLSIHHP KL

Best Arabidopsis Sequence Match ( AT5G20510.1 )
(BLAST)

001: MEGGTAHYSP RTVEEVFRDF KGRRAGIIQA LTTDVEDFFQ QCDPEKQNLC LYGFPNEVWE VNLPAEEVPP ELPEPALGIN FARDGMQERN WLSLVAVHSD
101: AWLLSVSFYF GSRFGFDRAD RKRLFSMINE VPTVYEVVTG NAEKQTKEMP SSANQNGNRS KSNSKMRGLE SKSSKTIHAK DEEEGLELEE GEEEEDEDED
201: EHGETLCGAC GDNYASDEFW ICCDMCEKWF HGECVKITPA RAEHIKHYKC PTCSNKRARP

Arabidopsis Description

AL5PHD finger protein ALFIN-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEM9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.