Factsheet for Bra034950.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12340	Canola	cytosol, nucleus, plastid	99.61	99.61
AT3G42790.1	Thale cress	nucleus	81.5	82.8
Bra020107.1-P	Field mustard	cytosol	77.56	77.56
Bra006562.1-P	Field mustard	cytosol	21.26	77.14
VIT_11s0016g01500.t01	Wine grape	nucleus	75.2	75.79
KRH71913	Soybean	cytosol	28.35	75.79
GSMUA_Achr8P30680_001	Banana	nucleus	71.65	72.51
Bra002307.1-P	Field mustard	nucleus	79.13	71.28
Bra036568.1-P	Field mustard	cytosol	71.65	70.82
Bra009887.1-P	Field mustard	nucleus	72.05	70.11
Bra017415.1-P	Field mustard	cytosol, nucleus, plastid	64.96	67.62
Bra024817.1-P	Field mustard	nucleus	64.96	67.07
Bra020543.1-P	Field mustard	cytosol, nucleus, plastid	65.75	65.75
Os07t0608400-01	Rice	nucleus	71.26	65.11
Bra016698.1-P	Field mustard	cytosol	63.78	64.8
Bra026825.1-P	Field mustard	nucleus	61.02	63.52
Bra034860.1-P	Field mustard	nucleus	60.63	62.35
Bra034169.1-P	Field mustard	nucleus	61.02	62.0
TraesCS2A01G172100.2	Wheat	nucleus	66.54	61.9
TraesCS2B01G198500.2	Wheat	nucleus	66.54	61.9
TraesCS2D01G179400.2	Wheat	nucleus	66.54	61.9
VIT_11s0016g01630.t01	Wine grape	plastid	24.41	61.39
EER97523	Sorghum	nucleus	64.17	60.59
Bra009121.1-P	Field mustard	nucleus	56.3	59.58
Bra026210.1-P	Field mustard	nucleus	58.27	59.2
Bra001393.1-P	Field mustard	nucleus	57.48	58.4
HORVU2Hr1G031990.2	Barley	nucleus	65.75	55.12
Zm00001d022110_P002	Maize	nucleus	63.78	51.43
Bra005861.1-P	Field mustard	mitochondrion	25.59	35.71
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	28.74	33.33
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	28.74	33.33

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	InterPro:Alfin	EnsemblPlantsGene:Bra034950	EnsemblPlants:Bra034950.1	EnsemblPlants:Bra034950.1-P
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0042393	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787	UniProt:M4F1K4
PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF98
SMART:SM00249	SUPFAM:SSF57903	UniParc:UPI000253E599	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD
InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT3G42790 (E=6e-097) AL3 | AL3 (ALFIN-LIKE 3); DNA binding / methylated histone residue binding

Coordinates

chrScaffold000100:-:54582..55726

Molecular Weight (calculated)

28295.9 Da

IEP (calculated)

4.679

GRAVY (calculated)

-0.635

Length

254 amino acids

Sequence
(BLAST)

001: MEGGAGLYNP RTVEEVFRDF KGRRAAIVKA LTSDVGEFYQ QCDPEKENLC LYGLPNEQWE VNLPAEEVPP ELPEPALGIN FARDGLSEKE WLSLVAIHSD
101: TWLLSVSFYF GSRFAFDKAD RKRLFDMING VPTIFEVVTG NMKKQTKEKS SAANRYGNLS KSDSKVRSSD GKNSKAVQAS NEEDGSEEED EDEHGETLCG
201: ACGDGDGTGT DDFWICCDVC EVWFHGKCVK ITPARAEHIK QYKCPACSNK RARP

Best Arabidopsis Sequence Match ( AT3G42790.1 )
(BLAST)

001: MEGGAALYNP RTVEEVFKDF KGRRTAIVKA LTTDVQEFYQ QCDPEKENLC LYGLPNEEWE VNLPAEEVPP ELPEPALGIN FARDGLSEKE WLSLVAIHSD
101: AWLLSVSFYF GSRFSFHKEE RKRLFNMIND VPTIFEVVTG MAKAKDKSSA ANQNGNKSKS NSKVRTSEGK SSKTKQPKEE DEEIDEDDED DHGETLCGAC
201: GDSDGADEFW ICCDLCEKWF HGKCVKITPA RAEHIKQYKC PSCSNKRARA

Arabidopsis Description

AL3AL3 [Source:UniProtKB/TrEMBL;Acc:A0A178VCG6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.