Factsheet for Bra006562.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51845	Canola	cytosol	100.0	100.0
VIT_11s0016g01630.t01	Wine grape	plastid	47.14	32.67
Bra020107.1-P	Field mustard	cytosol	88.57	24.41
AT5G20510.1	Thale cress	cytosol	90.0	24.23
VIT_11s0016g01500.t01	Wine grape	nucleus	87.14	24.21
GSMUA_Achr8P30680_001	Banana	nucleus	84.29	23.51
Bra002307.1-P	Field mustard	nucleus	90.0	22.34
Bra020543.1-P	Field mustard	cytosol, nucleus, plastid	80.0	22.05
Bra017415.1-P	Field mustard	cytosol, nucleus, plastid	75.71	21.72
Bra024817.1-P	Field mustard	nucleus	75.71	21.54
Bra009887.1-P	Field mustard	nucleus	80.0	21.46
Bra036568.1-P	Field mustard	cytosol	78.57	21.4
Bra034950.1-P	Field mustard	nucleus	77.14	21.26
TraesCS2A01G172100.2	Wheat	nucleus	81.43	20.88
TraesCS2B01G198500.2	Wheat	nucleus	81.43	20.88
TraesCS2D01G179400.2	Wheat	nucleus	81.43	20.88
Bra016698.1-P	Field mustard	cytosol	72.86	20.4
Bra026210.1-P	Field mustard	nucleus	71.43	20.0
Os07t0608400-01	Rice	nucleus	78.57	19.78
EER97523	Sorghum	nucleus	75.71	19.7
Bra026825.1-P	Field mustard	nucleus	68.57	19.67
Bra009121.1-P	Field mustard	nucleus	64.29	18.75
HORVU2Hr1G031990.2	Barley	nucleus	78.57	18.15
Bra001393.1-P	Field mustard	nucleus	64.29	18.0
Bra034860.1-P	Field mustard	nucleus	62.86	17.81
Bra034169.1-P	Field mustard	nucleus	62.86	17.6
Zm00001d022110_P002	Maize	nucleus	75.71	16.83
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	38.57	12.33
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	38.57	12.33
Bra005861.1-P	Field mustard	mitochondrion	5.71	2.2
KRH71913	Soybean	cytosol	1.43	1.05

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra006562	EnsemblPlants:Bra006562.1	EnsemblPlants:Bra006562.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787	UniProt:M4CQS1	PFAM:PF00628
ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF98	SMART:SM00249	SUPFAM:SSF57903
UniParc:UPI0002540046	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

AT5G20510 (E=9e-031) AL5 | AL5 (ALFIN-LIKE 5); DNA binding / methylated histone residue binding

Coordinates

chrA03:-:4063533..4063745

Molecular Weight (calculated)

7999.4 Da

IEP (calculated)

5.049

GRAVY (calculated)

-0.544

Length

70 amino acids

Sequence
(BLAST)

1: MFEEEGLDGD EHGDTLCGAC VDNYASDEFW ICCDMCEKWF HGICVKITPA RAEHIKHYKC PSCSNKRARP

Best Arabidopsis Sequence Match ( AT5G20510.2 )
(BLAST)

001: MCFEKQNLCL YGFPNEVWEV NLPAEEVPPE LPEPALGINF ARDGMQERNW LSLVAVHSDA WLLSVSFYFG SRFGFDRADR KRLFSMINEV PTVYEVVTGN
101: AEKQTKEMPS SANQNGNRSK SNSKMRGLES KSSKTIHAKD EEEGLELEEG EEEEDEDEDE HGETLCGACG DNYASDEFWI CCDMCEKWFH GECVKITPAR
201: AEHIKHYKCP TCSNKRARP

Arabidopsis Description

AL5PHD finger protein ALFIN-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEM9]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.