Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra010270.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02470.1 | Bra010270.1-P | AT4G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17436 | Canola | cytosol, nucleus, plastid | 100.0 | 100.0 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 100.0 | 100.0 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 92.21 | 87.89 |
| Bra024817.1-P | Field mustard | nucleus | 88.52 | 87.8 |
| KRH51269 | Soybean | nucleus | 82.79 | 80.48 |
| KRH01887 | Soybean | nucleus | 82.79 | 80.16 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 82.38 | 79.45 |
| Bra016698.1-P | Field mustard | cytosol | 80.33 | 78.4 |
| Bra026825.1-P | Field mustard | nucleus | 78.28 | 78.28 |
| Solyc01g102760.2.1 | Tomato | nucleus | 79.1 | 77.82 |
| GSMUA_AchrUn_... | Banana | cytosol | 38.11 | 76.86 |
| PGSC0003DMT400047018 | Potato | nucleus | 77.46 | 76.21 |
| Solyc01g102750.2.1 | Tomato | nucleus | 77.46 | 75.9 |
| Bra006562.1-P | Field mustard | cytosol | 21.72 | 75.71 |
| Zm00001d010241_P002 | Maize | cytosol | 46.72 | 70.37 |
| Os11t0244800-01 | Rice | nucleus | 72.54 | 69.69 |
| GSMUA_Achr10P... | Banana | nucleus | 72.13 | 69.29 |
| EES08261 | Sorghum | nucleus | 72.13 | 69.29 |
| TraesCS4B01G088200.1 | Wheat | nucleus | 72.13 | 69.29 |
| TraesCS4A01G227900.1 | Wheat | peroxisome | 71.72 | 68.9 |
| TraesCS4D01G085300.1 | Wheat | peroxisome | 71.72 | 68.9 |
| HORVU4Hr1G015060.3 | Barley | nucleus | 70.9 | 68.11 |
| GSMUA_Achr7P02940_001 | Banana | nucleus | 70.49 | 67.98 |
| GSMUA_Achr11P... | Banana | nucleus | 70.08 | 67.86 |
| Bra026210.1-P | Field mustard | nucleus | 69.26 | 67.6 |
| GSMUA_Achr3P16750_001 | Banana | nucleus | 70.08 | 67.59 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 70.49 | 67.19 |
| GSMUA_Achr2P05660_001 | Banana | nucleus | 69.26 | 66.8 |
| Bra036568.1-P | Field mustard | cytosol | 70.08 | 66.54 |
| GSMUA_Achr6P28820_001 | Banana | nucleus | 68.85 | 66.4 |
| EES05274 | Sorghum | nucleus | 69.26 | 66.02 |
| EES18243 | Sorghum | nucleus | 68.85 | 65.37 |
| Zm00001d038208_P001 | Maize | nucleus | 68.44 | 65.23 |
| Bra009887.1-P | Field mustard | nucleus | 69.67 | 65.13 |
| Os05t0419100-01 | Rice | nucleus | 68.85 | 65.12 |
| Bra034950.1-P | Field mustard | nucleus | 67.62 | 64.96 |
| TraesCS1A01G262200.1 | Wheat | peroxisome | 58.2 | 64.84 |
| HORVU1Hr1G064250.4 | Barley | mitochondrion, nucleus, peroxisome | 69.67 | 64.39 |
| TraesCS1D01G262200.1 | Wheat | peroxisome | 68.85 | 64.12 |
| OQU78932 | Sorghum | nucleus | 68.03 | 64.09 |
| TraesCS1B01G272800.3 | Wheat | peroxisome | 68.85 | 63.88 |
| Bra020107.1-P | Field mustard | cytosol | 66.39 | 63.78 |
| TraesCS3B01G437100.1 | Wheat | cytosol | 68.44 | 63.5 |
| TraesCS3A01G403600.1 | Wheat | cytosol | 68.44 | 63.5 |
| Bra020543.1-P | Field mustard | cytosol, nucleus, plastid | 65.98 | 63.39 |
| KXG33847 | Sorghum | nucleus | 66.39 | 63.28 |
| TraesCS3D01G398800.2 | Wheat | cytosol | 68.03 | 63.12 |
| Os02t0564100-01 | Rice | nucleus | 67.62 | 61.8 |
| Os01t0887700-01 | Rice | nucleus | 68.85 | 61.76 |
| Zm00001d041767_P002 | Maize | nucleus | 66.8 | 61.51 |
| Zm00001d042582_P001 | Maize | cytosol, mitochondrion, nucleus | 64.34 | 61.09 |
| Os04t0444900-01 | Rice | nucleus | 63.52 | 60.55 |
| KXG26388 | Sorghum | cytosol | 61.48 | 60.0 |
| Zm00001d016861_P003 | Maize | cytosol, nucleus, plastid | 68.85 | 59.57 |
| Bra034860.1-P | Field mustard | nucleus | 59.84 | 59.11 |
| Bra009121.1-P | Field mustard | nucleus | 57.79 | 58.75 |
| Zm00001d050816_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 68.85 | 58.54 |
| Bra034169.1-P | Field mustard | nucleus | 59.84 | 58.4 |
| Bra002307.1-P | Field mustard | nucleus | 66.8 | 57.8 |
| GSMUA_AchrUn_... | Banana | plastid | 29.92 | 57.03 |
| Zm00001d012196_P005 | Maize | nucleus | 64.75 | 55.05 |
| Bra001393.1-P | Field mustard | nucleus | 54.92 | 53.6 |
| Zm00001d023962_P001 | Maize | nucleus | 67.62 | 53.57 |
| Zm00001d025504_P001 | Maize | nucleus | 50.82 | 50.0 |
| HORVU3Hr1G090540.1 | Barley | nucleus | 68.44 | 47.71 |
| GSMUA_Achr10P... | Banana | nucleus | 46.72 | 43.85 |
| TraesCS2A01G312700.1 | Wheat | nucleus | 44.67 | 38.52 |
| Bra005861.1-P | Field mustard | mitochondrion | 28.69 | 38.46 |
| TraesCS2B01G329700.1 | Wheat | nucleus | 43.85 | 37.81 |
| TraesCS2D01G311200.1 | Wheat | nucleus | 43.85 | 37.81 |
| Zm00001d025491_P002 | Maize | nucleus | 53.28 | 35.71 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 27.87 | 31.05 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 27.87 | 31.05 |
| HORVU2Hr1G077670.3 | Barley | nucleus | 44.67 | 30.7 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | EnsemblPlantsGene:Bra017415 | EnsemblPlants:Bra017415.1 | EnsemblPlants:Bra017415.1-P |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042393 | GO:GO:0046872 | InterPro:IPR013083 |
| InterPro:IPR019787 | UniProt:M4DLN4 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 |
| PANTHER:PTHR12321 | PANTHER:PTHR12321:SF60 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI0000E64A23 | InterPro:Zinc_finger_PHD-type_CS |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
AT2G02470 (E=2e-104) AL6 | AL6 (ALFIN-LIKE 6); DNA binding / methylated histone residue binding
Coordinates
chrA09:-:15103021..15105179
Molecular Weight (calculated)
27374.2 Da
IEP (calculated)
4.788
GRAVY (calculated)
-0.626
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVITHPTPR TVDEVFTDFR GRRAGLIKAL TTDMVKFYQT CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW VSLVAVHSDS
101: WLLSVAFYFG ARFGFGKNER KKLFQMINEL PTIFEIVTGN AKQSKDLSGN NNTSSKSKSN GLKVPKMSSP PPKEEDESED EDEDDEQGAV CGACGDSDGT
201: DEFWICCDAC EKWFHGKCVK ITPAKAEHIK HYKCPSCSNK RARP
101: WLLSVAFYFG ARFGFGKNER KKLFQMINEL PTIFEIVTGN AKQSKDLSGN NNTSSKSKSN GLKVPKMSSP PPKEEDESED EDEDDEQGAV CGACGDSDGT
201: DEFWICCDAC EKWFHGKCVK ITPAKAEHIK HYKCPSCSNK RARP
001: MEGITHPIPR TVEEVFSDFR GRRAGLIKAL TNDMVKFYQT CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW VSLVAVHSDS
101: WLLSVAFYFG ARFGFGKNER KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKVAKMSSPP PKEEEEEEDE SEDESEDDEQ GAVCGACGDN
201: YGTDEFWICC DACEKWFHGK CVKITPAKAE HIKHYKCPTC SNKRARP
101: WLLSVAFYFG ARFGFGKNER KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKVAKMSSPP PKEEEEEEDE SEDESEDDEQ GAVCGACGDN
201: YGTDEFWICC DACEKWFHGK CVKITPAKAE HIKHYKCPTC SNKRARP
Arabidopsis Description
AL6AL6 [Source:UniProtKB/TrEMBL;Acc:A0A178VQJ7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.