Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| golgi:
15069638
nucleus: 19621931 |
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG33847 | Sorghum | nucleus | 85.29 | 90.62 |
| Zm00001d042582_P001 | Maize | cytosol, mitochondrion, nucleus | 84.19 | 89.11 |
| TraesCS3D01G398800.2 | Wheat | cytosol | 81.99 | 84.79 |
| Os05t0419100-01 | Rice | nucleus | 79.78 | 84.11 |
| TraesCS3B01G437100.1 | Wheat | cytosol | 81.25 | 84.03 |
| TraesCS3A01G403600.1 | Wheat | cytosol | 81.25 | 84.03 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 76.1 | 80.86 |
| CDY17594 | Canola | cytosol | 34.56 | 79.66 |
| Zm00001d012196_P005 | Maize | nucleus | 82.72 | 78.4 |
| Os11t0244800-01 | Rice | nucleus | 70.96 | 75.98 |
| Solyc01g102760.2.1 | Tomato | nucleus | 64.34 | 70.56 |
| KRH51269 | Soybean | nucleus | 65.07 | 70.52 |
| PGSC0003DMT400047018 | Potato | nucleus | 63.97 | 70.16 |
| Solyc01g102750.2.1 | Tomato | nucleus | 63.97 | 69.88 |
| KRH01887 | Soybean | nucleus | 64.71 | 69.84 |
| Bra024817.1-P | Field mustard | nucleus | 62.5 | 69.11 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 61.76 | 68.85 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 61.76 | 68.85 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 61.76 | 68.85 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 63.97 | 68.77 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 64.34 | 68.36 |
| CDY03049 | Canola | cytosol | 61.4 | 68.16 |
| Os02t0564100-01 | Rice | nucleus | 66.54 | 67.79 |
| AT1G14510.1 | Thale cress | nucleus | 62.5 | 67.46 |
| CDX81645 | Canola | cytosol | 59.19 | 66.26 |
| Bra026825.1-P | Field mustard | nucleus | 59.19 | 65.98 |
| CDY53545 | Canola | cytosol | 58.82 | 65.84 |
| CDX84026 | Canola | nucleus | 59.56 | 64.8 |
| Bra016698.1-P | Field mustard | cytosol | 59.19 | 64.4 |
| CDX96851 | Canola | cytosol | 59.19 | 64.4 |
| Os07t0608400-01 | Rice | nucleus | 64.71 | 63.31 |
| Os04t0444900-01 | Rice | nucleus | 59.56 | 63.28 |
| HORVU3Hr1G090540.1 | Barley | nucleus | 81.25 | 63.14 |
| CDY17593 | Canola | cytosol | 27.21 | 62.71 |
| CDY65375 | Canola | nucleus | 55.15 | 61.48 |
| Bra026210.1-P | Field mustard | nucleus | 56.25 | 61.2 |
| CDY45267 | Canola | nucleus | 44.12 | 58.82 |
| Os07t0233300-01 | Rice | nucleus | 51.1 | 56.97 |
| Os03t0818300-01 | Rice | nucleus | 48.9 | 53.85 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 27.57 | 34.25 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 27.57 | 34.25 |
| Os05t0163100-01 | Rice | nucleus | 30.15 | 30.83 |
| Os01t0158800-00 | Rice | plastid | 25.37 | 28.99 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | EntrezGene:4324896 | EMBL:AF047428 | InterPro:Alfin | ProteinID:BAB92630.1 |
| ProteinID:BAD82135.1 | ProteinID:BAF06950.1 | ProteinID:BAS75622.1 | ProteinID:EAZ14421.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006325 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0042393 | GO:GO:0046872 | InterPro:IPR013083 | InterPro:IPR019787 |
| EnsemblPlantsGene:Os01g0887700 | EnsemblPlants:Os01t0887700-01 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 |
| PANTHER:PTHR12321 | PANTHER:PTHR12321:SF77 | UniProt:Q7F2Z1 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI00000ABD51 |
| RefSeq:XP_015621936.1 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0887700-01);Similar to Nucleic acid binding protein. (Os01t0887700-02);Similar to Nucleic acid binding protein. (Os01t0887700-03)
Coordinates
chr1:-:38566148..38570861
Molecular Weight (calculated)
29605.5 Da
IEP (calculated)
5.305
GRAVY (calculated)
-0.781
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGGGGGGGG GGGGGGGGGG GGAPYATRTA EEVFRDLRGR RAGMIKALTT DVEKFYKLCD PEKENLCLYG YPNETWEVTL PAEEVPPEIP EPALGINFAR
101: DGMNEKDWLA LVAVHSDSWL LSVAFYFGAR FGFDREARRR LFNMINNLPT IFEVVTGAAK KQAKEKTPNS SSKSNKPSSK VQSKAESRSK SKLSAPKDEE
201: GSGDDEGEEE EDDHDNTLCG TCGTNDGKDE FWICCDNCEK WYHGKCVKIT PARAEHIKQY KCPDCTNKRA RA
101: DGMNEKDWLA LVAVHSDSWL LSVAFYFGAR FGFDREARRR LFNMINNLPT IFEVVTGAAK KQAKEKTPNS SSKSNKPSSK VQSKAESRSK SKLSAPKDEE
201: GSGDDEGEEE EDDHDNTLCG TCGTNDGKDE FWICCDNCEK WYHGKCVKIT PARAEHIKQY KCPDCTNKRA RA
001: MEGGAALYNP RTVEEVFKDF KGRRTAIVKA LTTDVQEFYQ QCDPEKENLC LYGLPNEEWE VNLPAEEVPP ELPEPALGIN FARDGLSEKE WLSLVAIHSD
101: AWLLSVSFYF GSRFSFHKEE RKRLFNMIND VPTIFEVVTG MAKAKDKSSA ANQNGNKSKS NSKVRTSEGK SSKTKQPKEE DEEIDEDDED DHGETLCGAC
201: GDSDGADEFW ICCDLCEKWF HGKCVKITPA RAEHIKQYKC PSCSNKRARA
101: AWLLSVSFYF GSRFSFHKEE RKRLFNMIND VPTIFEVVTG MAKAKDKSSA ANQNGNKSKS NSKVRTSEGK SSKTKQPKEE DEEIDEDDED DHGETLCGAC
201: GDSDGADEFW ICCDLCEKWF HGKCVKITPA RAEHIKQYKC PSCSNKRARA
Arabidopsis Description
AL3AL3 [Source:UniProtKB/TrEMBL;Acc:A0A178VCG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.