Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G083480.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02470.1 | HORVU3Hr1G083480.1 | AT4G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G398800.2 | Wheat | cytosol | 74.57 | 99.24 |
| TraesCS3B01G437100.1 | Wheat | cytosol | 74.57 | 99.24 |
| TraesCS3A01G403600.1 | Wheat | cytosol | 74.57 | 99.24 |
| KXG33847 | Sorghum | nucleus | 62.29 | 85.16 |
| Zm00001d042582_P001 | Maize | cytosol, mitochondrion, nucleus | 62.0 | 84.44 |
| Os01t0887700-01 | Rice | nucleus | 63.14 | 81.25 |
| HORVU1Hr1G064250.4 | Barley | mitochondrion, nucleus, peroxisome | 60.86 | 80.68 |
| CDY17594 | Canola | cytosol | 26.57 | 78.81 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 55.14 | 75.39 |
| Zm00001d012196_P005 | Maize | nucleus | 60.0 | 73.17 |
| HORVU4Hr1G015060.3 | Barley | nucleus | 51.43 | 70.87 |
| Bra024817.1-P | Field mustard | nucleus | 49.14 | 69.92 |
| Solyc01g102760.2.1 | Tomato | nucleus | 49.43 | 69.76 |
| PGSC0003DMT400047018 | Potato | nucleus | 48.86 | 68.95 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 49.71 | 68.77 |
| Solyc01g102750.2.1 | Tomato | nucleus | 48.86 | 68.67 |
| CDY03049 | Canola | cytosol | 48.0 | 68.57 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 47.71 | 68.44 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 47.71 | 68.44 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 47.71 | 68.44 |
| AT1G14510.1 | Thale cress | nucleus | 49.14 | 68.25 |
| KRH01887 | Soybean | nucleus | 48.86 | 67.86 |
| KRH51269 | Soybean | nucleus | 48.57 | 67.73 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 49.43 | 67.58 |
| CDX81645 | Canola | cytosol | 46.57 | 67.08 |
| Bra026825.1-P | Field mustard | nucleus | 46.0 | 65.98 |
| CDY53545 | Canola | cytosol | 45.71 | 65.84 |
| CDX84026 | Canola | nucleus | 46.86 | 65.6 |
| CDY17593 | Canola | cytosol | 22.0 | 65.25 |
| Bra016698.1-P | Field mustard | cytosol | 46.57 | 65.2 |
| CDX96851 | Canola | cytosol | 46.57 | 65.2 |
| CDY65375 | Canola | nucleus | 43.71 | 62.7 |
| Bra026210.1-P | Field mustard | nucleus | 44.57 | 62.4 |
| CDY45267 | Canola | nucleus | 36.0 | 61.76 |
| HORVU2Hr1G031990.2 | Barley | nucleus | 51.43 | 59.41 |
| HORVU2Hr1G052960.2 | Barley | cytosol | 37.71 | 53.66 |
| HORVU5Hr1G112420.6 | Barley | nucleus | 37.14 | 47.27 |
| HORVU1Hr1G024210.1 | Barley | nucleus | 41.71 | 43.07 |
| HORVU2Hr1G077670.3 | Barley | nucleus | 32.57 | 32.11 |
| HORVU0Hr1G025310.1 | Barley | plastid | 14.57 | 30.54 |
| HORVU7Hr1G021380.1 | Barley | plastid | 16.86 | 30.1 |
| HORVU5Hr1G059130.2 | Barley | nucleus | 12.86 | 30.0 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | UniProt:A0A287M8L7 | InterPro:Alfin | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0042393 | GO:GO:0046872 | EnsemblPlantsGene:HORVU3Hr1G090540 | EnsemblPlants:HORVU3Hr1G090540.1 | InterPro:IPR013083 |
| InterPro:IPR019787 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 | PANTHER:PTHR12321 |
| PANTHER:PTHR12321:SF77 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI000B47911C | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD |
| InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr3H:+:632242327..632247481
Molecular Weight (calculated)
38621.4 Da
IEP (calculated)
7.356
GRAVY (calculated)
-0.652
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: DGWDLALGRN ARSRRVSQSR AQILAEAPTG FPGNKTHSSS SISTSTFQAA CPSLLLLSPP PAAPTTASLL PVAALARSPR RHCRRPPMDG AGAGGAYVAR
101: TAEEVFRDLR GRRAGMIKAL TEDVDKFFKL CDPEKENLCL YGYPNETWEV TLPAEEVPPE IPEPALGINF ARDGMNEKDW LALVAVHSDS WLLSVAFYFG
201: ARFGFDKDNR RRLFNMINNL PTIYEVVTGI AKKQSKEKTP NSSSKSSKPS MKVLSRAEPR AKAKVPAPKD EEESGEDEGD DEEEEHDNTL CGTCGTNDGK
301: DEFWICCDNC EKWYHGKCVK ITPARAEHIK HYRCPECTNG GSNSNKRVKT
101: TAEEVFRDLR GRRAGMIKAL TEDVDKFFKL CDPEKENLCL YGYPNETWEV TLPAEEVPPE IPEPALGINF ARDGMNEKDW LALVAVHSDS WLLSVAFYFG
201: ARFGFDKDNR RRLFNMINNL PTIYEVVTGI AKKQSKEKTP NSSSKSSKPS MKVLSRAEPR AKAKVPAPKD EEESGEDEGD DEEEEHDNTL CGTCGTNDGK
301: DEFWICCDNC EKWYHGKCVK ITPARAEHIK HYRCPECTNG GSNSNKRVKT
001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
Arabidopsis Description
AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.