Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr6P30890_001 | |
| GSMUA_Achr7P16220_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02470.1 | GSMUA_Achr6P30890_001 | AT4G30860.1 | 21798944 |
| AT2G02470.1 | GSMUA_Achr7P16220_001 | AT4G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol | 44.14 | 93.39 |
| GSMUA_Achr7P02940_001 | Banana | nucleus | 88.67 | 89.72 |
| Zm00001d010241_P002 | Maize | cytosol | 53.91 | 85.19 |
| CDY17594 | Canola | cytosol | 38.28 | 83.05 |
| GSMUA_AchrUn_... | Banana | plastid | 41.02 | 82.03 |
| GSMUA_Achr6P28820_001 | Banana | nucleus | 79.3 | 80.24 |
| GSMUA_Achr11P... | Banana | nucleus | 78.91 | 80.16 |
| Os05t0419100-01 | Rice | nucleus | 80.08 | 79.46 |
| EES18243 | Sorghum | nucleus | 79.69 | 79.38 |
| Zm00001d038208_P001 | Maize | nucleus | 79.3 | 79.3 |
| GSMUA_Achr3P16750_001 | Banana | nucleus | 77.73 | 78.66 |
| GSMUA_Achr2P05660_001 | Banana | nucleus | 77.73 | 78.66 |
| GSMUA_Achr10P... | Banana | nucleus | 77.73 | 78.35 |
| TraesCS1D01G262200.1 | Wheat | peroxisome | 78.91 | 77.1 |
| HORVU1Hr1G064250.4 | Barley | mitochondrion, nucleus, peroxisome | 79.3 | 76.89 |
| TraesCS1B01G272800.3 | Wheat | peroxisome | 78.91 | 76.81 |
| KXG33847 | Sorghum | nucleus | 76.56 | 76.56 |
| Os01t0887700-01 | Rice | nucleus | 80.86 | 76.1 |
| TraesCS1A01G262200.1 | Wheat | peroxisome | 64.84 | 75.8 |
| Zm00001d042582_P001 | Maize | cytosol, mitochondrion, nucleus | 75.39 | 75.1 |
| KRH01887 | Soybean | nucleus | 73.44 | 74.6 |
| Solyc01g102760.2.1 | Tomato | nucleus | 72.27 | 74.6 |
| GSMUA_Achr8P30680_001 | Banana | nucleus | 73.05 | 74.5 |
| KRH51269 | Soybean | nucleus | 73.05 | 74.5 |
| Solyc01g102750.2.1 | Tomato | nucleus | 72.27 | 74.3 |
| PGSC0003DMT400047018 | Potato | nucleus | 71.88 | 74.19 |
| TraesCS3D01G398800.2 | Wheat | cytosol | 76.17 | 74.14 |
| TraesCS3B01G437100.1 | Wheat | cytosol | 75.78 | 73.76 |
| TraesCS3A01G403600.1 | Wheat | cytosol | 75.78 | 73.76 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 71.88 | 72.73 |
| Bra024817.1-P | Field mustard | nucleus | 68.75 | 71.54 |
| CDY03049 | Canola | cytosol | 67.58 | 70.61 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 67.19 | 70.49 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 67.19 | 70.49 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 67.19 | 70.49 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 69.53 | 69.53 |
| AT1G14510.1 | Thale cress | nucleus | 67.58 | 68.65 |
| CDX84026 | Canola | nucleus | 66.8 | 68.4 |
| Bra026825.1-P | Field mustard | nucleus | 64.84 | 68.03 |
| CDX81645 | Canola | cytosol | 64.45 | 67.9 |
| CDY53545 | Canola | cytosol | 64.45 | 67.9 |
| Bra016698.1-P | Field mustard | cytosol | 66.02 | 67.6 |
| CDX96851 | Canola | cytosol | 66.02 | 67.6 |
| Zm00001d012196_P005 | Maize | nucleus | 75.0 | 66.9 |
| CDY65375 | Canola | nucleus | 61.72 | 64.75 |
| CDY17593 | Canola | cytosol | 29.69 | 64.41 |
| Bra026210.1-P | Field mustard | nucleus | 62.89 | 64.4 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 58.98 | 62.4 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 58.98 | 62.4 |
| CDY45267 | Canola | nucleus | 49.61 | 62.25 |
| GSMUA_Achr10P... | Banana | nucleus | 58.59 | 61.98 |
| GSMUA_Achr10P... | Banana | nucleus | 56.64 | 57.54 |
| HORVU3Hr1G090540.1 | Barley | nucleus | 75.39 | 55.14 |
| GSMUA_Achr10P... | Banana | nucleus | 47.27 | 53.07 |
| GSMUA_Achr10P... | Banana | cytosol | 34.77 | 49.17 |
| GSMUA_Achr10P... | Banana | nucleus | 49.61 | 48.85 |
| GSMUA_Achr10P... | Banana | cytosol | 28.12 | 48.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 52.73 | 44.7 |
| GSMUA_Achr10P... | Banana | nucleus | 9.77 | 44.64 |
| GSMUA_Achr10P... | Banana | cytosol | 29.3 | 39.27 |
| GSMUA_Achr10P... | Banana | cytosol | 28.12 | 37.31 |
| GSMUA_Achr10P... | Banana | extracellular | 20.31 | 36.11 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0042393 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr8G32300_001 | EnsemblPlants:GSMUA_Achr8P32300_001 | EnsemblPlants:GSMUA_Achr8T32300_001 | InterPro:IPR013083 |
| InterPro:IPR019787 | UniProt:M0TVI2 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 |
| PANTHER:PTHR12321 | PANTHER:PTHR12321:SF77 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI000294A492 | InterPro:Zinc_finger_PHD-type_CS |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
PHD finger protein At5g26210 [Source:GMGC_GENE;Acc:GSMUA_Achr8G32300_001]
Coordinates
chr8:+:33760450..33765655
Molecular Weight (calculated)
28998.9 Da
IEP (calculated)
5.037
GRAVY (calculated)
-0.778
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGGGGPHSS RTAEEVFRDF RGRRAGMIKA LTTDVEKFYQ LCDPEKENLC LYGLPNETWE VTLPAEEVPP ELPEPALGIN FARDGMEEKD WLALVAVHSD
101: AWLLAVAFYF GARFGFDKES RRRLFNMINN LPTIFEVVTG TAKKLSKEKT SNSSSKNKPN SKTQSRPAES QTRASKMHSP KEDEDSGADE EEEEEEDHEN
201: TLCGACGDNY ANDEFWICCD MCERWFHGKC VRITPARAEH IKQYKCPSCS NKRARV
101: AWLLAVAFYF GARFGFDKES RRRLFNMINN LPTIFEVVTG TAKKLSKEKT SNSSSKNKPN SKTQSRPAES QTRASKMHSP KEDEDSGADE EEEEEEDHEN
201: TLCGACGDNY ANDEFWICCD MCERWFHGKC VRITPARAEH IKQYKCPSCS NKRARV
001: MEGITHPIPR TVEEVFSDFR GRRAGLIKAL TNDMVKFYQT CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW VSLVAVHSDS
101: WLLSVAFYFG ARFGFGKNER KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKSRQSESLS KVAKMSSPPP KEEEEEEDES EDESEDDEQG
201: AVCGACGDNY GTDEFWICCD ACEKWFHGKC VKITPAKAEH IKHYKCPTCS NKRARP
101: WLLSVAFYFG ARFGFGKNER KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKSRQSESLS KVAKMSSPPP KEEEEEEDES EDESEDDEQG
201: AVCGACGDNY GTDEFWICCD ACEKWFHGKC VKITPAKAEH IKHYKCPTCS NKRARP
Arabidopsis Description
AL6AL6 [Source:UniProtKB/TrEMBL;Acc:A0A178VQJ7]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.