Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d032143_P001 | |
| Zm00001d051057_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02470.1 | Zm00001d032143_P001 | AT4G30860.1 | 21798944 |
| AT2G02470.1 | Zm00001d051057_P002 | AT4G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES18243 | Sorghum | nucleus | 97.27 | 96.89 |
| Zm00001d010241_P002 | Maize | cytosol | 60.55 | 95.68 |
| Os05t0419100-01 | Rice | nucleus | 90.62 | 89.92 |
| Zm00001d049007_P001 | Maize | cytosol | 40.23 | 87.29 |
| TraesCS1D01G262200.1 | Wheat | peroxisome | 87.89 | 85.88 |
| TraesCS1B01G272800.3 | Wheat | peroxisome | 87.89 | 85.55 |
| TraesCS1A01G262200.1 | Wheat | peroxisome | 73.05 | 85.39 |
| HORVU1Hr1G064250.4 | Barley | mitochondrion, nucleus, peroxisome | 87.11 | 84.47 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 79.3 | 79.3 |
| Zm00001d042582_P001 | Maize | cytosol, mitochondrion, nucleus | 79.3 | 78.99 |
| CDY17594 | Canola | cytosol | 36.33 | 78.81 |
| KRH01887 | Soybean | nucleus | 71.09 | 72.22 |
| Solyc01g102760.2.1 | Tomato | nucleus | 69.92 | 72.18 |
| KRH51269 | Soybean | nucleus | 70.7 | 72.11 |
| PGSC0003DMT400047018 | Potato | nucleus | 69.14 | 71.37 |
| Solyc01g102750.2.1 | Tomato | nucleus | 69.14 | 71.08 |
| Bra024817.1-P | Field mustard | nucleus | 67.19 | 69.92 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 68.75 | 69.57 |
| Zm00001d012196_P005 | Maize | nucleus | 77.34 | 68.99 |
| CDY03049 | Canola | cytosol | 66.02 | 68.98 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 68.75 | 68.75 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 65.23 | 68.44 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 65.23 | 68.44 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 65.23 | 68.44 |
| CDX81645 | Canola | cytosol | 64.45 | 67.9 |
| CDX84026 | Canola | nucleus | 66.02 | 67.6 |
| CDY53545 | Canola | cytosol | 64.06 | 67.49 |
| CDX96851 | Canola | cytosol | 65.62 | 67.2 |
| Bra016698.1-P | Field mustard | cytosol | 65.62 | 67.2 |
| Zm00001d049006_P001 | Maize | plastid | 34.38 | 67.18 |
| AT1G14510.1 | Thale cress | nucleus | 66.02 | 67.06 |
| Bra026825.1-P | Field mustard | nucleus | 63.67 | 66.8 |
| CDY17593 | Canola | cytosol | 30.08 | 65.25 |
| Zm00001d016861_P003 | Maize | cytosol, nucleus, plastid | 70.7 | 64.18 |
| CDY65375 | Canola | nucleus | 60.55 | 63.52 |
| Zm00001d041767_P002 | Maize | nucleus | 65.23 | 63.02 |
| Bra026210.1-P | Field mustard | nucleus | 61.33 | 62.8 |
| Zm00001d050816_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 69.92 | 62.37 |
| CDY45267 | Canola | nucleus | 49.22 | 61.76 |
| Zm00001d009466_P001 | Maize | cytosol | 21.88 | 57.73 |
| Zm00001d010834_P001 | Maize | nucleus | 55.86 | 56.52 |
| Zm00001d044178_P001 | Maize | cytosol | 20.31 | 55.91 |
| Zm00001d005185_P001 | Maize | nucleus | 51.56 | 54.77 |
| Zm00001d023962_P001 | Maize | nucleus | 65.62 | 54.55 |
| Zm00001d037537_P001 | Maize | nucleus | 53.52 | 53.1 |
| Zm00001d028496_P001 | Maize | cytosol | 20.7 | 52.48 |
| Zm00001d025504_P001 | Maize | nucleus | 50.78 | 52.42 |
| Zm00001d034627_P002 | Maize | nucleus | 50.78 | 52.0 |
| Zm00001d036294_P001 | Maize | plastid | 25.39 | 50.39 |
| Zm00001d022110_P002 | Maize | nucleus | 58.98 | 47.94 |
| Zm00001d025491_P002 | Maize | nucleus | 54.69 | 38.46 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 28.91 | 33.79 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 28.91 | 33.79 |
Protein Annotations
| EntrezGene:100283630 | MapMan:15.5.8 | Gene3D:3.30.40.10 | ProteinID:AQK86051.1 | InterPro:Alfin | UniProt:B6TK34 |
| EMBL:EU965349 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0042393 | GO:GO:0046872 | InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 |
| PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF77 | SMART:SM00249 |
| SUPFAM:SSF57903 | TMHMM:TMhelix | UniParc:UPI000182D1E0 | InterPro:Zinc_finger_PHD-type_CS | EnsemblPlantsGene:Zm00001d038208 | EnsemblPlants:Zm00001d038208_P001 |
| EnsemblPlants:Zm00001d038208_T001 | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
Alfin-like-transcription factor 5PHD finger protein ALFIN-LIKE 6
Coordinates
chr6:+:151703542..151710829
Molecular Weight (calculated)
29111.0 Da
IEP (calculated)
5.298
GRAVY (calculated)
-0.814
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPGAGAHYS ARTAEEVFRD FRGRRAGMIK ALTNDVEKFY QLCDPEKENL CLYGYPNETW EVTLPAEEVP PEIPEPALGI NFARDGMNEK DWLALVAVHS
101: DAWLLAVAFY FAARFGFDKE ARRRLFNMIN NLPTIFEVAT GVAKKQNKEK EPNNTSKSNK PSSKMTTRPE SHLKATKVAP PKDEDDESGE EYEEEEERDN
201: TLCGSCGTND GKDEFWICCD SCERWYHGKC VKITPARAEH IKHYKCPDCS NKRARA
101: DAWLLAVAFY FAARFGFDKE ARRRLFNMIN NLPTIFEVAT GVAKKQNKEK EPNNTSKSNK PSSKMTTRPE SHLKATKVAP PKDEDDESGE EYEEEEERDN
201: TLCGSCGTND GKDEFWICCD SCERWYHGKC VKITPARAEH IKHYKCPDCS NKRARA
001: MEGITHPIPR TVEEVFSDFR GRRAGLIKAL TNDMVKFYQT CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW VSLVAVHSDS
101: WLLSVAFYFG ARFGFGKNER KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKSRQSESLS KVAKMSSPPP KEEEEEEDES EDESEDDEQG
201: AVCGACGDNY GTDEFWICCD ACEKWFHGKC VKITPAKAEH IKHYKCPTCS NKRARP
101: WLLSVAFYFG ARFGFGKNER KRLFQMINEL PTIFEVVSGN AKQSKDLSVN NNNSKSKPSG VKSRQSESLS KVAKMSSPPP KEEEEEEDES EDESEDDEQG
201: AVCGACGDNY GTDEFWICCD ACEKWFHGKC VKITPAKAEH IKHYKCPTCS NKRARP
Arabidopsis Description
AL6AL6 [Source:UniProtKB/TrEMBL;Acc:A0A178VQJ7]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.