Factsheet for Zm00001d050816_P002

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	nucleus, secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d032143_P001
Zm00001d051057_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02470.1	Zm00001d032143_P001	AT4G30860.1	21798944
AT2G02470.1	Zm00001d051057_P002	AT4G30860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05274	Sorghum	nucleus	85.02	95.31
Zm00001d049007_P001	Maize	cytosol	36.93	89.83
Zm00001d016861_P003	Maize	cytosol, nucleus, plastid	85.02	86.52
Os02t0564100-01	Rice	nucleus	76.66	82.4
CDY17594	Canola	cytosol	33.1	80.51
Zm00001d010241_P002	Maize	cytosol	43.55	77.16
Solyc01g102760.2.1	Tomato	nucleus	62.02	71.77
Solyc01g102750.2.1	Tomato	nucleus	62.02	71.49
PGSC0003DMT400047018	Potato	nucleus	61.67	71.37
Zm00001d038208_P001	Maize	nucleus	62.37	69.92
VIT_12s0035g01980.t01	Wine grape	nucleus	61.32	69.57
KRH01887	Soybean	nucleus	60.98	69.44
KRH51269	Soybean	nucleus	60.63	69.32
CDY04130	Canola	cytosol, nucleus, plastid	58.54	68.85
CDY17436	Canola	cytosol, nucleus, plastid	58.54	68.85
Bra017415.1-P	Field mustard	cytosol, nucleus, plastid	58.54	68.85
Bra024817.1-P	Field mustard	nucleus	57.84	67.48
Zm00001d042582_P001	Maize	cytosol, mitochondrion, nucleus	60.28	67.32
CDY03049	Canola	cytosol	57.14	66.94
AT2G02470.1	Thale cress	cytosol, nucleus, plastid	59.23	66.41
AT1G14510.1	Thale cress	nucleus	57.84	65.87
Zm00001d041767_P002	Maize	nucleus	60.63	65.66
CDX84026	Canola	nucleus	57.14	65.6
CDY53545	Canola	cytosol	55.4	65.43
CDX81645	Canola	cytosol	55.4	65.43
Bra016698.1-P	Field mustard	cytosol	56.45	64.8
CDX96851	Canola	cytosol	56.45	64.8
Bra026825.1-P	Field mustard	nucleus	55.05	64.75
CDY65375	Canola	nucleus	54.36	63.93
Bra026210.1-P	Field mustard	nucleus	55.05	63.2
CDY45267	Canola	nucleus	44.25	62.25
Zm00001d044178_P001	Maize	cytosol	19.51	60.22
Zm00001d049006_P001	Maize	plastid	27.18	59.54
Zm00001d009466_P001	Maize	cytosol	19.86	58.76
Zm00001d012196_P005	Maize	nucleus	58.54	58.54
CDY17593	Canola	cytosol	24.04	58.47
Zm00001d025504_P001	Maize	nucleus	50.17	58.06
Zm00001d023962_P001	Maize	nucleus	61.67	57.47
Zm00001d005185_P001	Maize	nucleus	48.08	57.26
Zm00001d028496_P001	Maize	cytosol	19.86	56.44
Zm00001d034627_P002	Maize	nucleus	48.43	55.6
Zm00001d010834_P001	Maize	nucleus	48.78	55.34
Zm00001d036294_P001	Maize	plastid	24.39	54.26
Zm00001d037537_P001	Maize	nucleus	46.69	51.94
Zm00001d022110_P002	Maize	nucleus	54.7	49.84
GSMUA_Achr10P...	Banana	nucleus	42.51	46.92
Zm00001d025491_P002	Maize	nucleus	52.96	41.76
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	25.44	33.33
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	25.44	33.33

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	UniProt:A0A1D6Q3E8	ProteinID:AQK53089.1	InterPro:Alfin	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0042393
GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787	PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359
PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF98	SMART:SM00249	SUPFAM:SSF57903	TMHMM:TMhelix
UniParc:UPI0008439824	InterPro:Zinc_finger_PHD-type_CS	EnsemblPlantsGene:Zm00001d050816	EnsemblPlants:Zm00001d050816_P002	EnsemblPlants:Zm00001d050816_T002	InterPro:Znf_FYVE_PHD
InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Alfin-like-transcription factor 7PHD finger protein

Coordinates

chr4:+:124419733..124423060

Molecular Weight (calculated)

31918.7 Da

IEP (calculated)

6.607

GRAVY (calculated)

-0.433

Length

287 amino acids

Sequence
(BLAST)

001: MDGDREGAAA VHHHARSPED VFRDFRARRA GIVKALTTGQ LVSRISCLLL FVLLVCGCFS DATAASVVRA DVEKFYQQCD PEKENLCLYG LPNETWEVTL
101: PAEEVPPELP EPALGINFAR DGMVEKDWLS LVAVHSDAWL LSVAFYFGAR FGFDKDARRR LFTMINNLPT VYEVVTGVAK KQSKAPNGSS KSSKSNSKPS
201: KQINSNSKPV KPAHPNEEED SGREDAEEDQ AYLCGSCGES YANGEFWICC DICEKWFHGK CVRITPAKAE HIKQYKCPSC STKRSRE

Best Arabidopsis Sequence Match ( AT1G14510.1 )
(BLAST)

001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA

Arabidopsis Description

AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.