Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d032143_P001 | |
| Zm00001d051057_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02470.1 | Zm00001d032143_P001 | AT4G30860.1 | 21798944 |
| AT2G02470.1 | Zm00001d051057_P002 | AT4G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG33847 | Sorghum | nucleus | 97.67 | 98.05 |
| Zm00001d012196_P005 | Maize | nucleus | 94.16 | 84.32 |
| Os01t0887700-01 | Rice | nucleus | 89.11 | 84.19 |
| TraesCS3D01G398800.2 | Wheat | cytosol | 85.21 | 83.27 |
| TraesCS3A01G403600.1 | Wheat | cytosol | 84.82 | 82.89 |
| Zm00001d010241_P002 | Maize | cytosol | 52.14 | 82.72 |
| TraesCS3B01G437100.1 | Wheat | cytosol | 84.44 | 82.51 |
| Zm00001d049007_P001 | Maize | cytosol | 37.74 | 82.2 |
| Zm00001d038208_P001 | Maize | nucleus | 78.99 | 79.3 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 75.1 | 75.39 |
| CDY17594 | Canola | cytosol | 33.85 | 73.73 |
| Solyc01g102760.2.1 | Tomato | nucleus | 65.37 | 67.74 |
| KRH51269 | Soybean | nucleus | 66.15 | 67.73 |
| KRH01887 | Soybean | nucleus | 66.15 | 67.46 |
| PGSC0003DMT400047018 | Potato | nucleus | 64.59 | 66.94 |
| VIT_12s0035g01980.t01 | Wine grape | nucleus | 65.76 | 66.8 |
| Solyc01g102750.2.1 | Tomato | nucleus | 64.59 | 66.67 |
| Bra024817.1-P | Field mustard | nucleus | 62.65 | 65.45 |
| Zm00001d049006_P001 | Maize | plastid | 33.07 | 64.89 |
| CDY03049 | Canola | cytosol | 61.48 | 64.49 |
| AT2G02470.1 | Thale cress | cytosol, nucleus, plastid | 64.2 | 64.45 |
| CDX84026 | Canola | nucleus | 62.65 | 64.4 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 61.09 | 64.34 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 61.09 | 64.34 |
| Bra017415.1-P | Field mustard | cytosol, nucleus, plastid | 61.09 | 64.34 |
| AT1G14510.1 | Thale cress | nucleus | 63.03 | 64.29 |
| Zm00001d041767_P002 | Maize | nucleus | 66.15 | 64.15 |
| CDX96851 | Canola | cytosol | 62.26 | 64.0 |
| Bra016698.1-P | Field mustard | cytosol | 62.26 | 64.0 |
| CDX81645 | Canola | cytosol | 60.31 | 63.79 |
| Bra026825.1-P | Field mustard | nucleus | 59.92 | 63.11 |
| CDY53545 | Canola | cytosol | 59.53 | 62.96 |
| Zm00001d016861_P003 | Maize | cytosol, nucleus, plastid | 68.09 | 62.06 |
| HORVU3Hr1G090540.1 | Barley | nucleus | 84.44 | 62.0 |
| CDY17593 | Canola | cytosol | 28.4 | 61.86 |
| Zm00001d050816_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 67.32 | 60.28 |
| Bra026210.1-P | Field mustard | nucleus | 57.98 | 59.6 |
| CDY65375 | Canola | nucleus | 56.42 | 59.43 |
| CDY45267 | Canola | nucleus | 47.08 | 59.31 |
| Zm00001d010834_P001 | Maize | nucleus | 55.64 | 56.52 |
| Zm00001d023962_P001 | Maize | nucleus | 67.7 | 56.49 |
| Zm00001d044178_P001 | Maize | cytosol | 19.84 | 54.84 |
| Zm00001d009466_P001 | Maize | cytosol | 20.62 | 54.64 |
| Zm00001d037537_P001 | Maize | nucleus | 54.09 | 53.88 |
| Zm00001d005185_P001 | Maize | nucleus | 49.42 | 52.7 |
| Zm00001d025504_P001 | Maize | nucleus | 49.42 | 51.21 |
| Zm00001d034627_P002 | Maize | nucleus | 49.42 | 50.8 |
| Zm00001d028496_P001 | Maize | cytosol | 19.84 | 50.49 |
| Zm00001d022110_P002 | Maize | nucleus | 59.53 | 48.57 |
| Zm00001d036294_P001 | Maize | plastid | 23.74 | 47.29 |
| Zm00001d025491_P002 | Maize | nucleus | 52.92 | 37.36 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 29.96 | 35.16 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 29.96 | 35.16 |
Protein Annotations
| EntrezGene:100284916 | MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | EMBL:BT066153 | UniProt:C0PCY4 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042393 | GO:GO:0046872 | InterPro:IPR013083 |
| InterPro:IPR019787 | EMBL:KJ728320 | ProteinID:ONM35803.1 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 |
| PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF77 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI000194B4BD |
| InterPro:Zinc_finger_PHD-type_CS | EnsemblPlantsGene:Zm00001d042582 | EnsemblPlants:Zm00001d042582_P001 | EnsemblPlants:Zm00001d042582_T001 | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD |
| InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
Alfin-like-transcription factor 13PHD finger protein
Coordinates
chr3:+:172730778..172735201
Molecular Weight (calculated)
28823.6 Da
IEP (calculated)
5.287
GRAVY (calculated)
-0.770
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGGSGPAP NAAHTAEEVF RDYKARRAGM IKALTTDVER FFKLCDPEKE NLCLYGYPDE TWEVTLPAEE VPPEIPEPAL GINFARDGMN EKDWLALVAV
101: HSDSWLLSVA FYFGARFGFD REARRRLFSL INNMPTIFEV VTGAVKKQQA KEKTPNSSSK SNKPSSKVQS RAESRSKAKV PKDEEESGDD DGDEEAEEHD
201: NTLCGTCGTN DGKDQFWICC DNCEKWYHGK CVKITPARAE HIKQYKCPDC TNKRVRA
101: HSDSWLLSVA FYFGARFGFD REARRRLFSL INNMPTIFEV VTGAVKKQQA KEKTPNSSSK SNKPSSKVQS RAESRSKAKV PKDEEESGDD DGDEEAEEHD
201: NTLCGTCGTN DGKDQFWICC DNCEKWYHGK CVKITPARAE HIKQYKCPDC TNKRVRA
001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA
Arabidopsis Description
AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.