Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER90633 | Sorghum | nucleus | 96.0 | 96.0 |
| Os03t0818300-01 | Rice | nucleus | 78.0 | 78.95 |
| TraesCS5D01G486400.2 | Wheat | nucleus | 76.0 | 75.7 |
| TraesCS5B01G486600.1 | Wheat | nucleus | 76.0 | 75.7 |
| Zm00001d005185_P001 | Maize | nucleus | 71.6 | 74.27 |
| VIT_08s0105g00360.t01 | Wine grape | nucleus | 67.6 | 69.55 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 66.8 | 69.01 |
| GSMUA_Achr10P... | Banana | nucleus | 66.8 | 69.01 |
| VIT_13s0067g01000.t01 | Wine grape | nucleus | 66.4 | 68.88 |
| KRH65724 | Soybean | nucleus | 65.6 | 68.62 |
| KRH49390 | Soybean | nucleus | 65.6 | 68.62 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 66.0 | 68.18 |
| KRH38049 | Soybean | nucleus | 64.8 | 68.07 |
| KRH00242 | Soybean | nucleus | 64.8 | 67.78 |
| PGSC0003DMT400049364 | Potato | nucleus | 64.8 | 67.5 |
| Solyc10g076690.1.1 | Tomato | nucleus | 64.8 | 67.5 |
| PGSC0003DMT400059399 | Potato | nucleus | 64.0 | 66.39 |
| Solyc09g005360.2.1 | Tomato | nucleus | 63.6 | 65.98 |
| AT3G11200.1 | Thale cress | nucleus | 64.8 | 65.85 |
| AT5G05610.1 | Thale cress | nucleus | 63.2 | 65.56 |
| PGSC0003DMT400028638 | Potato | nucleus | 62.8 | 65.42 |
| HORVU5Hr1G112420.6 | Barley | nucleus | 71.6 | 65.09 |
| CDX73886 | Canola | nucleus | 63.6 | 64.9 |
| CDY36305 | Canola | cytosol | 64.8 | 64.8 |
| Zm00001d049007_P001 | Maize | cytosol | 30.4 | 64.41 |
| Solyc10g085180.1.1 | Tomato | nucleus | 61.6 | 64.17 |
| CDY00726 | Canola | nucleus | 62.8 | 64.08 |
| Bra034169.1-P | Field mustard | nucleus | 64.0 | 64.0 |
| CDY08544 | Canola | nucleus | 63.2 | 63.97 |
| Bra034860.1-P | Field mustard | nucleus | 63.2 | 63.97 |
| CDY01002 | Canola | nucleus | 62.8 | 62.8 |
| KRH56367 | Soybean | peroxisome | 54.0 | 61.36 |
| CDX70142 | Canola | cytosol | 58.4 | 60.83 |
| Solyc06g051420.2.1 | Tomato | nucleus | 59.6 | 60.82 |
| CDX98851 | Canola | nucleus | 58.0 | 60.42 |
| Bra009121.1-P | Field mustard | nucleus | 58.0 | 60.42 |
| Bra001393.1-P | Field mustard | nucleus | 59.6 | 59.6 |
| KRH69940 | Soybean | peroxisome | 52.4 | 59.55 |
| Zm00001d010834_P001 | Maize | nucleus | 58.4 | 57.71 |
| Zm00001d037537_P001 | Maize | nucleus | 56.0 | 54.26 |
| Zm00001d010241_P002 | Maize | cytosol | 34.8 | 53.7 |
| Zm00001d038208_P001 | Maize | nucleus | 52.0 | 50.78 |
| CDY36322 | Canola | cytosol, plasma membrane, plastid | 58.4 | 50.69 |
| Zm00001d044178_P001 | Maize | cytosol | 18.8 | 50.54 |
| Zm00001d009466_P001 | Maize | cytosol | 19.6 | 50.52 |
| Zm00001d042582_P001 | Maize | cytosol, mitochondrion, nucleus | 50.8 | 49.42 |
| Zm00001d016861_P003 | Maize | cytosol, nucleus, plastid | 55.6 | 49.29 |
| Zm00001d041767_P002 | Maize | nucleus | 52.0 | 49.06 |
| Zm00001d028496_P001 | Maize | cytosol | 19.6 | 48.51 |
| Zm00001d050816_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 55.6 | 48.43 |
| HORVU5Hr1G059130.2 | Barley | nucleus | 28.0 | 46.67 |
| Zm00001d036294_P001 | Maize | plastid | 24.0 | 46.51 |
| Zm00001d012196_P005 | Maize | nucleus | 51.2 | 44.6 |
| Zm00001d025504_P001 | Maize | nucleus | 43.6 | 43.95 |
| Zm00001d022110_P002 | Maize | nucleus | 54.8 | 43.49 |
| Zm00001d023962_P001 | Maize | nucleus | 52.4 | 42.53 |
| Zm00001d049006_P001 | Maize | plastid | 20.8 | 39.69 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 32.8 | 37.44 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 32.4 | 36.99 |
| Zm00001d025491_P002 | Maize | nucleus | 46.8 | 32.14 |
Protein Annotations
| EntrezGene:100192747 | MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | UniProt:B4FCH3 | EMBL:BT034811 |
| EMBL:EU975302 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042393 | GO:GO:0046872 |
| EMBL:HQ858736 | InterPro:IPR013083 | InterPro:IPR019787 | ProteinID:ONM10828.1 | ProteinID:ONM10830.1 | PFAM:PF00628 |
| PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF96 | SMART:SM00249 |
| SUPFAM:SSF57903 | UniParc:UPI00017B6686 | InterPro:Zinc_finger_PHD-type_CS | EnsemblPlantsGene:Zm00001d034627 | EnsemblPlants:Zm00001d034627_P002 | EnsemblPlants:Zm00001d034627_T002 |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
Alfin-like-transcription factor 15PHD finger protein ALFIN-LIKE 2
Coordinates
chr1:-:298407976..298412063
Molecular Weight (calculated)
27930.4 Da
IEP (calculated)
5.396
GRAVY (calculated)
-0.634
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMAPAAVSS NPRSVEEIFK DFSGRRAGLV RALTSDVDDF CSFCDPDKEN LCLYGLPNGS WEVSPPADEV PPELPEPALG INFARDGMQR RDWLSLVAVH
101: SDSWLISVAF FYGARLNAND RKRLFSMISD LPSVFEAFAD RKHVRDRSGV DSSGKSRHSS KRGNDGHAKN SRAAAPAAKE YDDDDDEEDE EHTETFCGSC
201: GGLYNANEFW IGCDICERWF HGKCVRITPA KADHIKHYKC PDCSSKKIRQ
101: SDSWLISVAF FYGARLNAND RKRLFSMISD LPSVFEAFAD RKHVRDRSGV DSSGKSRHSS KRGNDGHAKN SRAAAPAAKE YDDDDDEEDE EHTETFCGSC
201: GGLYNANEFW IGCDICERWF HGKCVRITPA KADHIKHYKC PDCSSKKIRQ
001: MAAAAVSSNP RTVEEIFKDY SARRAALLRA LTKDVDDFYS QCDPEKENLC LYGHPNESWE VNLPAEEVPP ELPEPALGIN FARDGMQRKD WLSLVAVHSD
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ
Arabidopsis Description
AL2PHD finger protein ALFIN-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRM4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.