Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009121.1-P | Field mustard | nucleus | 99.58 | 99.58 |
| CDX98851 | Canola | nucleus | 92.5 | 92.5 |
| AT5G05610.1 | Thale cress | nucleus | 89.58 | 89.21 |
| CDX73886 | Canola | nucleus | 81.25 | 79.59 |
| CDY00726 | Canola | nucleus | 80.83 | 79.18 |
| CDY08544 | Canola | nucleus | 80.42 | 78.14 |
| CDY36305 | Canola | cytosol | 81.25 | 78.0 |
| CDY01002 | Canola | nucleus | 80.83 | 77.6 |
| PGSC0003DMT400059399 | Potato | nucleus | 73.33 | 73.03 |
| VIT_08s0105g00360.t01 | Wine grape | nucleus | 73.33 | 72.43 |
| KRH65724 | Soybean | nucleus | 70.83 | 71.13 |
| KRH38049 | Soybean | nucleus | 70.42 | 71.01 |
| PGSC0003DMT400049364 | Potato | nucleus | 69.17 | 69.17 |
| KRH00242 | Soybean | nucleus | 68.75 | 69.04 |
| KRH49390 | Soybean | nucleus | 68.75 | 69.04 |
| CDY17594 | Canola | cytosol | 33.75 | 68.64 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 68.33 | 67.77 |
| PGSC0003DMT400028638 | Potato | nucleus | 67.08 | 67.08 |
| GSMUA_Achr10P... | Banana | nucleus | 67.5 | 66.94 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 66.67 | 66.12 |
| Solyc06g051420.2.1 | Tomato | nucleus | 66.67 | 65.31 |
| CDY51845 | Canola | cytosol | 18.75 | 64.29 |
| KRH56367 | Soybean | peroxisome | 58.33 | 63.64 |
| KRH69940 | Soybean | peroxisome | 57.92 | 63.18 |
| Os07t0233300-01 | Rice | nucleus | 63.33 | 62.3 |
| CDY36322 | Canola | cytosol, plasma membrane, plastid | 73.75 | 61.46 |
| OQU88744 | Sorghum | cytosol | 60.83 | 60.33 |
| HORVU2Hr1G052960.2 | Barley | cytosol | 61.25 | 59.76 |
| Zm00001d005185_P001 | Maize | nucleus | 59.17 | 58.92 |
| Os03t0818300-01 | Rice | nucleus | 60.42 | 58.7 |
| Zm00001d034627_P002 | Maize | nucleus | 60.83 | 58.4 |
| EER90633 | Sorghum | nucleus | 60.83 | 58.4 |
| CDY03049 | Canola | cytosol | 59.17 | 57.96 |
| EES00286 | Sorghum | nucleus | 58.33 | 57.85 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 58.75 | 57.79 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 58.75 | 57.79 |
| OQU77499 | Sorghum | nucleus | 60.0 | 56.92 |
| Zm00001d010834_P001 | Maize | nucleus | 60.0 | 56.92 |
| CDX81645 | Canola | cytosol | 57.5 | 56.79 |
| TraesCS5D01G486400.2 | Wheat | nucleus | 59.17 | 56.57 |
| TraesCS5B01G486600.1 | Wheat | nucleus | 59.17 | 56.57 |
| CDY53545 | Canola | cytosol | 57.08 | 56.38 |
| CDY70751 | Canola | cytosol | 59.58 | 56.3 |
| CDY12340 | Canola | cytosol, nucleus, plastid | 59.58 | 56.3 |
| CDY19781 | Canola | cytosol | 60.0 | 56.03 |
| CDX87962 | Canola | cytosol, nucleus, plastid | 59.17 | 55.91 |
| CDX92458 | Canola | cytosol, nucleus, plastid | 59.58 | 55.64 |
| CDX87061 | Canola | cytosol | 59.58 | 55.64 |
| CDY05535 | Canola | cytosol, nucleus, plastid | 58.75 | 55.51 |
| TraesCS1D01G111700.1 | Wheat | nucleus | 59.17 | 55.25 |
| TraesCS1B01G129400.1 | Wheat | nucleus | 59.17 | 55.25 |
| TraesCS1A01G110200.1 | Wheat | nucleus | 59.17 | 55.25 |
| CDX84026 | Canola | nucleus | 57.5 | 55.2 |
| CDY45267 | Canola | nucleus | 46.67 | 54.9 |
| CDX96851 | Canola | cytosol | 57.08 | 54.8 |
| CDY52629 | Canola | nucleus | 59.58 | 54.79 |
| CDY16540 | Canola | cytosol | 59.58 | 54.58 |
| CDY65375 | Canola | nucleus | 55.42 | 54.51 |
| CDX88221 | Canola | nucleus | 59.17 | 54.41 |
| CDY24988 | Canola | cytosol, nucleus, plastid | 56.67 | 54.4 |
| Zm00001d037537_P001 | Maize | nucleus | 57.08 | 53.1 |
| CDY17593 | Canola | cytosol | 25.42 | 51.69 |
| OQU88643 | Sorghum | extracellular, golgi, mitochondrion | 25.83 | 51.24 |
| HORVU5Hr1G112420.6 | Barley | nucleus | 55.83 | 48.73 |
| HORVU1Hr1G024210.1 | Barley | nucleus | 59.17 | 41.89 |
| CDX80967 | Canola | mitochondrion | 29.58 | 39.23 |
| CDY11330 | Canola | mitochondrion | 29.58 | 38.59 |
| Os05t0163100-01 | Rice | nucleus | 35.83 | 32.33 |
| HORVU5Hr1G059130.2 | Barley | nucleus | 19.17 | 30.67 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 27.92 | 30.59 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 27.92 | 30.59 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | GO:A0A078C092 | InterPro:Alfin | EnsemblPlants:CDX70142 | ProteinID:CDX70142 |
| ProteinID:CDX70142.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042393 | EnsemblPlantsGene:GSBRNA2T00136253001 |
| InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 |
| PANTHER:PTHR12321 | PANTHER:PTHR12321:SF96 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI0004EDADC7 | InterPro:Zinc_finger_PHD-type_CS |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
BnaA10g24910D
Coordinates
chrLK031790:+:3302794..3304353
Molecular Weight (calculated)
27336.5 Da
IEP (calculated)
5.687
GRAVY (calculated)
-0.565
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGESSNPGT VEEIFKDFRG RRSAFLRALS VDVDKFYSLC NPEMENLCLY GHPNGTWEVN LPAEEVPPEL PEPALGINFA RDGMQRQDWL SLVAVHSDCW
101: LLSVSSYFGA RLSRNEKNRL FSLINDLPTL FEVVTGRKTI KDKPSMDHES KYQNGLKRSI EGEMKITRKL MEESCEDEED EHGDTLCGSC GGHYLNVEFW
201: ICCDVCERWY HGKCVKITPA KAESMKQYKC PSCCTKKGRQ
101: LLSVSSYFGA RLSRNEKNRL FSLINDLPTL FEVVTGRKTI KDKPSMDHES KYQNGLKRSI EGEMKITRKL MEESCEDEED EHGDTLCGSC GGHYLNVEFW
201: ICCDVCERWY HGKCVKITPA KAESMKQYKC PSCCTKKGRQ
001: MAAESSNPRT VEEIFKDFSG RRSGFLRALS VDVDKFYSLC DPEMENLCLY GHPNGTWEVN LPAEEVPPEL PEPALGINFA RDGMQRKDWL SLVAVHSDCW
101: LLSVSSYFGA RLNRNERKRL FSLINDLPTL FEVVTGRKPI KDGKPSMDLG SKSRNGVKRS IEGQTKSTPK LMEESYEDED DEHGDTLCGS CGGNYTNDEF
201: WICCDVCERW YHGKCVKITP AKAESIKQYK CPSCCTKKGR Q
101: LLSVSSYFGA RLNRNERKRL FSLINDLPTL FEVVTGRKPI KDGKPSMDLG SKSRNGVKRS IEGQTKSTPK LMEESYEDED DEHGDTLCGS CGGNYTNDEF
201: WICCDVCERW YHGKCVKITP AKAESIKQYK CPSCCTKKGR Q
Arabidopsis Description
AL1AL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPZ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.