Factsheet for Os07t0233300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0887700-01
Os02t0564100-01
Os04t0444900-01
Os05t0419100-01
Os11t0244800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11200.1	Os01t0887700-01	AT1G14510.1	21798944
AT3G11200.1	Os02t0564100-01	AT1G14510.1	21798944
AT3G11200.1	Os04t0444900-01	AT1G14510.1	21798944
AT3G11200.1	Os05t0419100-01	AT1G14510.1	21798944
AT3G11200.1	Os11t0244800-01	AT1G14510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G052960.2	Barley	cytosol	88.93	88.21
OQU88744	Sorghum	cytosol	78.28	78.93
Os03t0818300-01	Rice	nucleus	79.1	78.14
Zm00001d005185_P001	Maize	nucleus	75.82	76.76
GSMUA_Achr7P15530_001	Banana	nucleus	73.36	73.97
GSMUA_Achr10P...	Banana	nucleus	72.95	73.55
VIT_08s0105g00360.t01	Wine grape	nucleus	72.95	73.25
KRH65724	Soybean	nucleus	71.72	73.22
KRH38049	Soybean	nucleus	71.31	73.11
KRH49390	Soybean	nucleus	71.31	72.8
GSMUA_Achr2P18960_001	Banana	nucleus	72.13	72.73
PGSC0003DMT400059399	Potato	nucleus	71.72	72.61
VIT_13s0067g01000.t01	Wine grape	nucleus	71.72	72.61
Solyc10g076690.1.1	Tomato	nucleus	71.31	72.5
PGSC0003DMT400049364	Potato	nucleus	71.31	72.5
KRH00242	Soybean	nucleus	70.9	72.38
Solyc09g005360.2.1	Tomato	nucleus	71.31	72.2
PGSC0003DMT400028638	Potato	nucleus	70.08	71.25
Solyc10g085180.1.1	Tomato	nucleus	69.67	70.83
AT5G05610.1	Thale cress	nucleus	67.62	68.46
AT3G11200.1	Thale cress	nucleus	68.44	67.89
CDX73886	Canola	nucleus	67.21	66.94
Bra034860.1-P	Field mustard	nucleus	67.21	66.4
CDY08544	Canola	nucleus	67.21	66.4
CDY00726	Canola	nucleus	66.39	66.12
CDY36305	Canola	cytosol	67.62	66.0
Bra034169.1-P	Field mustard	nucleus	67.62	66.0
CDY01002	Canola	nucleus	66.8	65.2
KRH56367	Soybean	peroxisome	58.2	64.55
CDX70142	Canola	cytosol	62.3	63.33
Solyc06g051420.2.1	Tomato	nucleus	63.52	63.27
Bra009121.1-P	Field mustard	nucleus	61.89	62.92
CDX98851	Canola	nucleus	61.89	62.92
KRH69940	Soybean	peroxisome	56.56	62.73
Bra001393.1-P	Field mustard	nucleus	61.89	60.4
OQU88643	Sorghum	extracellular, golgi, mitochondrion	28.69	57.85
Os11t0244800-01	Rice	nucleus	59.84	57.48
Os04t0444900-01	Rice	nucleus	58.2	55.47
Os07t0608400-01	Rice	nucleus	62.3	54.68
Os05t0419100-01	Rice	nucleus	56.56	53.49
Os02t0564100-01	Rice	nucleus	57.79	52.81
CDY36322	Canola	cytosol, plasma membrane, plastid	62.3	52.78
Os01t0887700-01	Rice	nucleus	56.97	51.1
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	32.79	36.53
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	32.79	36.53
Os05t0163100-01	Rice	nucleus	38.11	34.96
Os01t0158800-00	Rice	plastid	25.82	26.47

Protein Annotations

MapMan:15.5.8	Gene3D:3.30.40.10	EntrezGene:4342784	EMBL:AK073637	InterPro:Alfin	ProteinID:BAC21510.1
ProteinID:BAF21155.1	ProteinID:BAT00728.1	ProteinID:EAZ39202.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0042393	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787	EnsemblPlantsGene:Os07g0233300
EnsemblPlants:Os07t0233300-01	PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR12321
PANTHER:PTHR12321:SF96	UniProt:Q8H383	SMART:SM00249	SUPFAM:SSF57903	UniParc:UPI00000AD85C	RefSeq:XP_015647369.1
InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Similar to Nucleic acid binding protein-like. (Os07t0233300-01);Similar to PHD finger protein. (Os07t0233300-02);Similar to cDNA clone:J033048B22, full insert sequence. (Os07t0233300-03)

Coordinates

chr7:-:7414575..7418059

Molecular Weight (calculated)

27406.1 Da

IEP (calculated)

6.836

GRAVY (calculated)

-0.657

Length

244 amino acids

Sequence
(BLAST)

001: MEMAAPVSPA PRTVEDIFKD FSGRRAGLVR ALTVDVDEFY GFCDPEKENL CLYGHPNGRW EVALPAEEVP PELPEPALGI NFARDGMHRR DWLSLVAVHS
101: DSWLLSVAFF FGARLNGNER KRLFSLINDH PTVLEALSDR KHGRDNKSGA DNGSKSRHSG KRANDVQTKT SRPAVVDDGY DEEEHSETLC GTCGGRYNAN
201: EFWIGCDICE RWFHGKCVRI TPAKAEHIKH YKCPDCSSSK KSRQ

Best Arabidopsis Sequence Match ( AT3G11200.1 )
(BLAST)

001: MAAAAVSSNP RTVEEIFKDY SARRAALLRA LTKDVDDFYS QCDPEKENLC LYGHPNESWE VNLPAEEVPP ELPEPALGIN FARDGMQRKD WLSLVAVHSD
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ

Arabidopsis Description

AL2PHD finger protein ALFIN-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.