Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P15530_001 | Banana | nucleus | 93.8 | 93.8 |
| GSMUA_Achr10P... | Banana | nucleus | 92.15 | 92.15 |
| VIT_08s0105g00360.t01 | Wine grape | nucleus | 78.51 | 78.19 |
| KRH38049 | Soybean | nucleus | 76.86 | 78.15 |
| KRH49390 | Soybean | nucleus | 76.86 | 77.82 |
| PGSC0003DMT400059399 | Potato | nucleus | 77.27 | 77.59 |
| KRH65724 | Soybean | nucleus | 76.45 | 77.41 |
| Solyc09g005360.2.1 | Tomato | nucleus | 76.86 | 77.18 |
| KRH00242 | Soybean | nucleus | 76.03 | 76.99 |
| Solyc10g076690.1.1 | Tomato | nucleus | 75.62 | 76.25 |
| VIT_13s0067g01000.t01 | Wine grape | nucleus | 75.21 | 75.52 |
| PGSC0003DMT400049364 | Potato | nucleus | 74.79 | 75.42 |
| AT5G05610.1 | Thale cress | nucleus | 72.31 | 72.61 |
| AT3G11200.1 | Thale cress | nucleus | 73.55 | 72.36 |
| Os07t0233300-01 | Rice | nucleus | 72.73 | 72.13 |
| PGSC0003DMT400028638 | Potato | nucleus | 71.07 | 71.67 |
| Solyc10g085180.1.1 | Tomato | nucleus | 71.07 | 71.67 |
| CDX73886 | Canola | nucleus | 71.9 | 71.02 |
| EES00286 | Sorghum | nucleus | 70.66 | 70.66 |
| CDY00726 | Canola | nucleus | 71.07 | 70.2 |
| Bra034860.1-P | Field mustard | nucleus | 71.49 | 70.04 |
| CDY08544 | Canola | nucleus | 71.49 | 70.04 |
| Bra034169.1-P | Field mustard | nucleus | 72.31 | 70.0 |
| OQU88744 | Sorghum | cytosol | 69.83 | 69.83 |
| CDY36305 | Canola | cytosol | 71.9 | 69.6 |
| CDY01002 | Canola | nucleus | 71.49 | 69.2 |
| HORVU2Hr1G052960.2 | Barley | cytosol | 70.25 | 69.11 |
| OQU77499 | Sorghum | nucleus | 71.07 | 67.98 |
| Zm00001d010834_P001 | Maize | nucleus | 70.66 | 67.59 |
| Os03t0818300-01 | Rice | nucleus | 68.59 | 67.21 |
| CDX98851 | Canola | nucleus | 66.53 | 67.08 |
| Zm00001d005185_P001 | Maize | nucleus | 66.53 | 66.81 |
| Zm00001d034627_P002 | Maize | nucleus | 69.01 | 66.8 |
| CDX70142 | Canola | cytosol | 66.12 | 66.67 |
| KRH56367 | Soybean | peroxisome | 60.33 | 66.36 |
| Bra009121.1-P | Field mustard | nucleus | 65.7 | 66.25 |
| TraesCS1B01G129400.1 | Wheat | nucleus | 70.25 | 66.15 |
| TraesCS1A01G110200.1 | Wheat | nucleus | 70.25 | 66.15 |
| TraesCS1D01G111700.1 | Wheat | nucleus | 70.25 | 66.15 |
| EER90633 | Sorghum | nucleus | 68.18 | 66.0 |
| KRH69940 | Soybean | peroxisome | 58.68 | 64.55 |
| Solyc06g051420.2.1 | Tomato | nucleus | 65.29 | 64.49 |
| Bra001393.1-P | Field mustard | nucleus | 66.12 | 64.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 31.82 | 63.64 |
| TraesCS5D01G486400.2 | Wheat | nucleus | 65.7 | 63.35 |
| TraesCS5B01G486600.1 | Wheat | nucleus | 65.29 | 62.95 |
| GSMUA_Achr8P30680_001 | Banana | nucleus | 64.88 | 62.55 |
| Zm00001d037537_P001 | Maize | nucleus | 66.53 | 62.4 |
| GSMUA_Achr11P... | Banana | nucleus | 62.81 | 60.32 |
| GSMUA_Achr10P... | Banana | nucleus | 63.22 | 60.24 |
| GSMUA_Achr7P02940_001 | Banana | nucleus | 62.81 | 60.08 |
| GSMUA_Achr3P16750_001 | Banana | nucleus | 62.4 | 59.68 |
| GSMUA_Achr6P28820_001 | Banana | nucleus | 61.98 | 59.29 |
| GSMUA_Achr8P32300_001 | Banana | nucleus | 62.4 | 58.98 |
| GSMUA_Achr10P... | Banana | nucleus | 53.31 | 56.58 |
| GSMUA_Achr2P05660_001 | Banana | nucleus | 59.09 | 56.52 |
| OQU88643 | Sorghum | extracellular, golgi, mitochondrion | 27.69 | 55.37 |
| CDY36322 | Canola | cytosol, plasma membrane, plastid | 65.29 | 54.86 |
| HORVU5Hr1G112420.6 | Barley | nucleus | 61.57 | 54.18 |
| GSMUA_AchrUn_... | Banana | plastid | 28.51 | 53.91 |
| GSMUA_Achr10P... | Banana | nucleus | 54.55 | 52.38 |
| HORVU1Hr1G024210.1 | Barley | nucleus | 70.25 | 50.15 |
| GSMUA_Achr10P... | Banana | nucleus | 9.92 | 42.86 |
| Os05t0163100-01 | Rice | nucleus | 46.69 | 42.48 |
| GSMUA_AchrUn_... | Banana | nucleus | 52.07 | 41.72 |
| GSMUA_Achr10P... | Banana | cytosol | 25.21 | 40.67 |
| GSMUA_Achr10P... | Banana | cytosol | 30.17 | 40.33 |
| GSMUA_Achr10P... | Banana | nucleus | 40.91 | 38.08 |
| HORVU5Hr1G059130.2 | Barley | nucleus | 21.49 | 34.67 |
| GSMUA_Achr10P... | Banana | cytosol | 26.45 | 33.51 |
| GSMUA_Achr10P... | Banana | cytosol | 25.21 | 31.61 |
| GSMUA_Achr10P... | Banana | extracellular | 16.94 | 28.47 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | InterPro:Alfin | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0042393 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr2G18960_001 | EnsemblPlants:GSMUA_Achr2P18960_001 | EnsemblPlants:GSMUA_Achr2T18960_001 | InterPro:IPR013083 |
| InterPro:IPR019787 | UniProt:M0S987 | PFAM:PF00628 | PFAM:PF12165 | ScanProsite:PS01359 | PFscan:PS50016 |
| PANTHER:PTHR12321 | PANTHER:PTHR12321:SF96 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI000294DECC | InterPro:Zinc_finger_PHD-type_CS |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
PHD finger protein At5g26210 [Source:GMGC_GENE;Acc:GSMUA_Achr2G18960_001]
Coordinates
chr2:-:19167892..19177137
Molecular Weight (calculated)
27141.6 Da
IEP (calculated)
5.096
GRAVY (calculated)
-0.705
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVGSISSAP RSVEEIYKDY SGRRAGIIRA LTNDVDEFYA QCDPEKENLC LYGHPNDSWE VNLPAEEVPP ELPEPALGIN FARDGMERRD WLSLIAVHSD
101: SWLLSVAFYL GARLNRNERK RLFSMINELP SVFEVVSDRR QSREKSSMDS GSKSKTATKR TSDGQIKSNS KTADEGYGED DDEHSETLCG ACGGSYSADE
201: FWIACDVCER WFHGKCVKIT PAKAESIKQY KCPSCSSKKG RQ
101: SWLLSVAFYL GARLNRNERK RLFSMINELP SVFEVVSDRR QSREKSSMDS GSKSKTATKR TSDGQIKSNS KTADEGYGED DDEHSETLCG ACGGSYSADE
201: FWIACDVCER WFHGKCVKIT PAKAESIKQY KCPSCSSKKG RQ
001: MAAESSNPRT VEEIFKDFSG RRSGFLRALS VDVDKFYSLC DPEMENLCLY GHPNGTWEVN LPAEEVPPEL PEPALGINFA RDGMQRKDWL SLVAVHSDCW
101: LLSVSSYFGA RLNRNERKRL FSLINDLPTL FEVVTGRKPI KDGKPSMDLG SKSRNGVKRS IEGQTKSTPK LMEESYEDED DEHGDTLCGS CGGNYTNDEF
201: WICCDVCERW YHGKCVKITP AKAESIKQYK CPSCCTKKGR Q
101: LLSVSSYFGA RLNRNERKRL FSLINDLPTL FEVVTGRKPI KDGKPSMDLG SKSRNGVKRS IEGQTKSTPK LMEESYEDED DEHGDTLCGS CGGNYTNDEF
201: WICCDVCERW YHGKCVKITP AKAESIKQYK CPSCCTKKGR Q
Arabidopsis Description
AL1AL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPZ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.