Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G064250.4 | |
| HORVU2Hr1G077670.3 | |
| HORVU3Hr1G090540.1 | |
| HORVU4Hr1G015060.3 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G486600.1 | Wheat | nucleus | 58.0 | 34.66 |
| TraesCS5D01G486400.2 | Wheat | nucleus | 57.33 | 34.26 |
| HORVU5Hr1G112420.6 | Barley | nucleus | 60.67 | 33.09 |
| Zm00001d034627_P002 | Maize | nucleus | 46.67 | 28.0 |
| EER90633 | Sorghum | nucleus | 44.67 | 26.8 |
| HORVU2Hr1G052960.2 | Barley | cytosol | 42.67 | 26.02 |
| Os03t0818300-01 | Rice | nucleus | 42.67 | 25.91 |
| VIT_13s0067g01000.t01 | Wine grape | nucleus | 36.67 | 22.82 |
| PGSC0003DMT400028638 | Potato | nucleus | 36.0 | 22.5 |
| KRH65724 | Soybean | nucleus | 35.33 | 22.18 |
| Solyc10g085180.1.1 | Tomato | nucleus | 35.33 | 22.08 |
| Solyc09g005360.2.1 | Tomato | nucleus | 35.33 | 21.99 |
| PGSC0003DMT400059399 | Potato | nucleus | 35.33 | 21.99 |
| VIT_08s0105g00360.t01 | Wine grape | nucleus | 35.33 | 21.81 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 34.67 | 21.49 |
| KRH38049 | Soybean | nucleus | 34.0 | 21.43 |
| KRH00242 | Soybean | nucleus | 34.0 | 21.34 |
| KRH49390 | Soybean | nucleus | 34.0 | 21.34 |
| Solyc10g076690.1.1 | Tomato | nucleus | 34.0 | 21.25 |
| PGSC0003DMT400049364 | Potato | nucleus | 34.0 | 21.25 |
| GSMUA_Achr10P... | Banana | nucleus | 34.0 | 21.07 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 34.0 | 21.07 |
| Bra009121.1-P | Field mustard | nucleus | 30.67 | 19.17 |
| CDX70142 | Canola | cytosol | 30.67 | 19.17 |
| AT5G05610.1 | Thale cress | nucleus | 30.67 | 19.09 |
| HORVU4Hr1G015060.3 | Barley | nucleus | 32.0 | 18.9 |
| Bra001393.1-P | Field mustard | nucleus | 31.33 | 18.8 |
| Bra034169.1-P | Field mustard | nucleus | 31.33 | 18.8 |
| CDY36305 | Canola | cytosol | 31.33 | 18.8 |
| CDX73886 | Canola | nucleus | 30.67 | 18.78 |
| CDY00726 | Canola | nucleus | 30.67 | 18.78 |
| AT3G11200.1 | Thale cress | nucleus | 30.67 | 18.7 |
| CDY08544 | Canola | nucleus | 30.67 | 18.62 |
| Bra034860.1-P | Field mustard | nucleus | 30.67 | 18.62 |
| Solyc06g051420.2.1 | Tomato | nucleus | 30.0 | 18.37 |
| KRH56367 | Soybean | peroxisome | 26.67 | 18.18 |
| CDY01002 | Canola | nucleus | 30.0 | 18.0 |
| CDX98851 | Canola | nucleus | 28.67 | 17.92 |
| HORVU1Hr1G064250.4 | Barley | mitochondrion, nucleus, peroxisome | 30.0 | 17.05 |
| KRH69940 | Soybean | peroxisome | 24.67 | 16.82 |
| HORVU2Hr1G031990.2 | Barley | nucleus | 33.33 | 16.5 |
| HORVU1Hr1G024210.1 | Barley | nucleus | 35.33 | 15.63 |
| HORVU3Hr1G090540.1 | Barley | nucleus | 30.0 | 12.86 |
| CDY36322 | Canola | cytosol, plasma membrane, plastid | 22.0 | 11.46 |
| HORVU2Hr1G077670.3 | Barley | nucleus | 24.0 | 10.14 |
| HORVU0Hr1G025310.1 | Barley | plastid | 0.0 | 0.0 |
| HORVU7Hr1G021380.1 | Barley | plastid | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | UniProt:A0A287RDS4 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 |
| EnsemblPlantsGene:HORVU5Hr1G059130 | EnsemblPlants:HORVU5Hr1G059130.2 | InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 | ScanProsite:PS01359 |
| PFscan:PS50016 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF37 | SMART:SM00249 | SUPFAM:SSF57903 | UniParc:UPI000B45FC1B |
| InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
No Description!
Coordinates
chrchr5H:-:461446790..461447348
Molecular Weight (calculated)
10481.0 Da
IEP (calculated)
6.493
GRAVY (calculated)
-0.696
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXS SKPKQRTDDV RPKNSRAVAR EEDDDDDEEE HSETFCGSCS
101: GIYNASEFWI GCDICERWFH GKCVRITPAK ADHIKHYKCP ECSSSKKIRQ
101: GIYNASEFWI GCDICERWFH GKCVRITPAK ADHIKHYKCP ECSSSKKIRQ
001: MCFEKQNLCL YGFPNEVWEV NLPAEEVPPE LPEPALGINF ARDGMQERNW LSLVAVHSDA WLLSVSFYFG SRFGFDRADR KRLFSMINEV PTVYEVVTGN
101: AEKQTKEMPS SANQNGNRSK SNSKMRGLES KSSKTIHAKD EEEGLELEEG EEEEDEDEDE HGETLCGACG DNYASDEFWI CCDMCEKWFH GECVKITPAR
201: AEHIKHYKCP TCSNKRARP
101: AEKQTKEMPS SANQNGNRSK SNSKMRGLES KSSKTIHAKD EEEGLELEEG EEEEDEDEDE HGETLCGACG DNYASDEFWI CCDMCEKWFH GECVKITPAR
201: AEHIKHYKCP TCSNKRARP
Arabidopsis Description
AL5PHD finger protein ALFIN-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEM9]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.