Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- plastid 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G11200.1 | CDX81645 | AT1G14510.1 | 21798944 |
| AT3G11200.1 | CDX84026 | AT1G14510.1 | 21798944 |
| AT3G11200.1 | CDX96851 | AT1G14510.1 | 21798944 |
| AT3G11200.1 | CDY53545 | AT1G14510.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034169.1-P | Field mustard | nucleus | 79.51 | 91.6 |
| CDY36305 | Canola | cytosol | 78.12 | 90.0 |
| CDY08544 | Canola | nucleus | 75.0 | 87.45 |
| CDY00726 | Canola | nucleus | 74.31 | 87.35 |
| CDX73886 | Canola | nucleus | 73.96 | 86.94 |
| CDY01002 | Canola | nucleus | 75.0 | 86.4 |
| AT3G11200.1 | Thale cress | nucleus | 73.61 | 86.18 |
| CDX70142 | Canola | cytosol | 61.46 | 73.75 |
| PGSC0003DMT400059399 | Potato | nucleus | 60.76 | 72.61 |
| CDY17594 | Canola | cytosol | 29.51 | 72.03 |
| VIT_08s0105g00360.t01 | Wine grape | nucleus | 60.76 | 72.02 |
| KRH38049 | Soybean | nucleus | 59.38 | 71.85 |
| CDX98851 | Canola | nucleus | 59.72 | 71.67 |
| KRH65724 | Soybean | nucleus | 59.03 | 71.13 |
| KRH49390 | Soybean | nucleus | 57.64 | 69.46 |
| KRH00242 | Soybean | nucleus | 57.64 | 69.46 |
| PGSC0003DMT400049364 | Potato | nucleus | 57.29 | 68.75 |
| GSMUA_Achr10P... | Banana | nucleus | 56.6 | 67.36 |
| GSMUA_Achr7P15530_001 | Banana | nucleus | 56.6 | 67.36 |
| PGSC0003DMT400028638 | Potato | nucleus | 55.9 | 67.08 |
| KRH56367 | Soybean | peroxisome | 50.69 | 66.36 |
| KRH69940 | Soybean | peroxisome | 50.35 | 65.91 |
| Solyc06g051420.2.1 | Tomato | nucleus | 55.56 | 65.31 |
| GSMUA_Achr2P18960_001 | Banana | nucleus | 54.86 | 65.29 |
| Os07t0233300-01 | Rice | nucleus | 52.78 | 62.3 |
| OQU88744 | Sorghum | cytosol | 51.39 | 61.16 |
| Zm00001d005185_P001 | Maize | nucleus | 50.69 | 60.58 |
| Os03t0818300-01 | Rice | nucleus | 50.69 | 59.11 |
| HORVU2Hr1G052960.2 | Barley | cytosol | 50.35 | 58.94 |
| Zm00001d034627_P002 | Maize | nucleus | 50.69 | 58.4 |
| EES00286 | Sorghum | nucleus | 48.26 | 57.44 |
| EER90633 | Sorghum | nucleus | 49.31 | 56.8 |
| CDY16540 | Canola | cytosol | 50.69 | 55.73 |
| CDX92458 | Canola | cytosol, nucleus, plastid | 49.65 | 55.64 |
| CDY12340 | Canola | cytosol, nucleus, plastid | 48.96 | 55.51 |
| TraesCS5B01G486600.1 | Wheat | nucleus | 48.26 | 55.38 |
| CDX87962 | Canola | cytosol, nucleus, plastid | 48.61 | 55.12 |
| CDY70751 | Canola | cytosol | 48.61 | 55.12 |
| TraesCS5D01G486400.2 | Wheat | nucleus | 47.57 | 54.58 |
| Zm00001d010834_P001 | Maize | nucleus | 47.92 | 54.55 |
| OQU77499 | Sorghum | nucleus | 47.92 | 54.55 |
| CDY04130 | Canola | cytosol, nucleus, plastid | 46.18 | 54.51 |
| CDY17436 | Canola | cytosol, nucleus, plastid | 46.18 | 54.51 |
| CDY03049 | Canola | cytosol | 45.49 | 53.47 |
| CDY19781 | Canola | cytosol | 47.57 | 53.31 |
| CDY53545 | Canola | cytosol | 44.79 | 53.09 |
| CDX81645 | Canola | cytosol | 44.79 | 53.09 |
| CDX84026 | Canola | nucleus | 45.83 | 52.8 |
| CDX96851 | Canola | cytosol | 45.83 | 52.8 |
| CDY05535 | Canola | cytosol, nucleus, plastid | 46.53 | 52.76 |
| TraesCS1D01G111700.1 | Wheat | nucleus | 46.88 | 52.53 |
| TraesCS1B01G129400.1 | Wheat | nucleus | 46.88 | 52.53 |
| TraesCS1A01G110200.1 | Wheat | nucleus | 46.88 | 52.53 |
| CDX87061 | Canola | cytosol | 46.88 | 52.53 |
| CDY52629 | Canola | nucleus | 47.22 | 52.11 |
| OQU88643 | Sorghum | extracellular, golgi, mitochondrion | 21.88 | 52.07 |
| CDY24988 | Canola | cytosol, nucleus, plastid | 45.14 | 52.0 |
| CDX88221 | Canola | nucleus | 46.88 | 51.72 |
| Zm00001d037537_P001 | Maize | nucleus | 44.79 | 50.0 |
| CDY65375 | Canola | nucleus | 42.01 | 49.59 |
| CDY45267 | Canola | nucleus | 34.72 | 49.02 |
| HORVU5Hr1G112420.6 | Barley | nucleus | 43.75 | 45.82 |
| CDY51845 | Canola | cytosol | 11.11 | 45.71 |
| HORVU1Hr1G024210.1 | Barley | nucleus | 46.88 | 39.82 |
| CDX80967 | Canola | mitochondrion | 25.0 | 39.78 |
| CDY11330 | Canola | mitochondrion | 25.0 | 39.13 |
| CDY17593 | Canola | cytosol | 15.97 | 38.98 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 22.22 | 29.22 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 22.22 | 29.22 |
| Os05t0163100-01 | Rice | nucleus | 26.04 | 28.2 |
| HORVU5Hr1G059130.2 | Barley | nucleus | 11.46 | 22.0 |
Protein Annotations
| MapMan:15.5.8 | Gene3D:3.30.40.10 | GO:A0A078HEW8 | UniProt:A0A078HEW8 | InterPro:Alfin | EnsemblPlants:CDY36322 |
| ProteinID:CDY36322 | ProteinID:CDY36322.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0042393 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00060299001 | InterPro:IPR013083 |
| PFAM:PF12165 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF96 | SUPFAM:SSF57903 | TMHMM:TMhelix | UniParc:UPI0004EEB7BD |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
BnaA01g30960DBnaA01g30960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HEW8]
Coordinates
chrLK032372:-:339435..341754
Molecular Weight (calculated)
33302.1 Da
IEP (calculated)
5.004
GRAVY (calculated)
-0.491
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAVSSNPR TVEEIFKDYT SRRAALLRAL TKDVDGFYSQ CDPEKENLCL YGHPNESWEV NLPAEEVPPE LPEPALGINF ARDGMQRKDW LSLVAVHSDC
101: WLLSVSFYFG ARLNRNERKR LFSLINDLPT LFDVVTGRKP IKDNKPSSDS GSKSRNGGTK RSIEGQPKST TPKLMEERYE EEEDEEEEDE HGDTLCGSCG
201: GNYTQDEFWI GCDVCERWYH GKCFFFFFFF FFFFFFFFFF RLELTGMAFL TTRHRKSLSF GTVFTFQMCD NQLTGSFPTL KSKGTYYP
101: WLLSVSFYFG ARLNRNERKR LFSLINDLPT LFDVVTGRKP IKDNKPSSDS GSKSRNGGTK RSIEGQPKST TPKLMEERYE EEEDEEEEDE HGDTLCGSCG
201: GNYTQDEFWI GCDVCERWYH GKCFFFFFFF FFFFFFFFFF RLELTGMAFL TTRHRKSLSF GTVFTFQMCD NQLTGSFPTL KSKGTYYP
001: MAAAAVSSNP RTVEEIFKDY SARRAALLRA LTKDVDDFYS QCDPEKENLC LYGHPNESWE VNLPAEEVPP ELPEPALGIN FARDGMQRKD WLSLVAVHSD
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ
101: CWLLSVSFYF GARLNRNERK RLFSLINDLP TLFDVVTGRK AMKDNKPSSD SGSKSRNGTK RSIDGQTKSS TPKLMEESYE EEEEEDEHGD TLCGSCGGHY
201: TNEEFWICCD VCERWYHGKC VKITPAKAES IKQYKCPPCC AKKGRQ
Arabidopsis Description
AL2PHD finger protein ALFIN-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRM4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.