CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01887
KRH51269

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11200.1	KRH01887	AT1G14510.1	21798944
AT3G11200.1	KRH51269	AT1G14510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49390	Soybean	nucleus	98.74	98.74
KRH38049	Soybean	nucleus	91.63	92.02
KRH65724	Soybean	nucleus	91.21	91.21
VIT_08s0105g00360.t01	Wine grape	nucleus	84.1	82.72
PGSC0003DMT400059399	Potato	nucleus	83.26	82.57
PGSC0003DMT400049364	Potato	nucleus	79.92	79.58
GSMUA_Achr7P15530_001	Banana	nucleus	77.41	76.45
GSMUA_Achr10P...	Banana	nucleus	77.41	76.45
KRH56367	Soybean	peroxisome	70.29	76.36
GSMUA_Achr2P18960_001	Banana	nucleus	76.99	76.03
PGSC0003DMT400028638	Potato	nucleus	76.15	75.83
KRH69940	Soybean	peroxisome	68.62	74.55
AT3G11200.1	Thale cress	nucleus	76.57	74.39
AT5G05610.1	Thale cress	nucleus	74.9	74.27
CDX73886	Canola	nucleus	75.73	73.88
CDY00726	Canola	nucleus	75.31	73.47
Bra034860.1-P	Field mustard	nucleus	74.9	72.47
CDY08544	Canola	nucleus	74.9	72.47
Bra034169.1-P	Field mustard	nucleus	75.73	72.4
CDY36305	Canola	cytosol	75.31	72.0
CDY01002	Canola	nucleus	75.31	72.0
Os07t0233300-01	Rice	nucleus	72.38	70.9
Solyc06g051420.2.1	Tomato	nucleus	71.97	70.2
Os03t0818300-01	Rice	nucleus	71.55	69.23
CDX70142	Canola	cytosol	69.04	68.75
Bra009121.1-P	Field mustard	nucleus	68.62	68.33
CDX98851	Canola	nucleus	68.2	67.92
KRH62601	Soybean	cytosol	43.93	67.74
OQU88744	Sorghum	cytosol	67.78	66.94
Bra001393.1-P	Field mustard	nucleus	69.87	66.8
OQU77499	Sorghum	nucleus	69.87	66.01
HORVU2Hr1G052960.2	Barley	cytosol	67.78	65.85
EES00286	Sorghum	nucleus	66.53	65.7
Zm00001d005185_P001	Maize	nucleus	65.69	65.15
Zm00001d010834_P001	Maize	nucleus	68.62	64.82
Zm00001d034627_P002	Maize	nucleus	67.78	64.8
EER90633	Sorghum	nucleus	67.78	64.8
KRH37475	Soybean	nucleus	66.95	64.52
TraesCS5D01G486400.2	Wheat	nucleus	66.53	63.35
TraesCS5B01G486600.1	Wheat	nucleus	66.53	63.35
KRH19253	Soybean	nucleus	66.53	63.35
KRH02655	Soybean	nucleus	66.11	62.7
KRH23260	Soybean	nucleus	64.44	62.6
KRH51269	Soybean	nucleus	65.69	62.55
KRH01887	Soybean	nucleus	65.69	62.3
KRH71913	Soybean	cytosol	24.69	62.11
KRH47546	Soybean	nucleus	65.69	62.06
TraesCS1B01G129400.1	Wheat	nucleus	66.53	61.87
TraesCS1D01G111700.1	Wheat	nucleus	66.53	61.87
TraesCS1A01G110200.1	Wheat	nucleus	66.53	61.87
KRH15616	Soybean	nucleus	66.11	61.72
KRH06119	Soybean	nucleus	65.27	61.66
KRH10063	Soybean	nucleus	63.6	61.29
Zm00001d037537_P001	Maize	nucleus	65.69	60.85
CDY36322	Canola	cytosol, plasma membrane, plastid	69.46	57.64
HORVU5Hr1G112420.6	Barley	nucleus	61.92	53.82
KRH05401	Soybean	endoplasmic reticulum, nucleus, plastid	55.23	53.23
OQU88643	Sorghum	extracellular, golgi, mitochondrion	26.78	52.89
KRH26115	Soybean	endoplasmic reticulum, extracellular	19.25	52.27
KRH61563	Soybean	cytosol	46.44	50.45
HORVU1Hr1G024210.1	Barley	nucleus	66.53	46.9
Os05t0163100-01	Rice	nucleus	41.42	37.22
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	32.22	35.16
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	32.22	35.16
HORVU5Hr1G059130.2	Barley	nucleus	21.34	34.0

Protein Annotations

EntrezGene:100819621	MapMan:15.5.8	Gene3D:3.30.40.10	EMBL:ACUP02011412	InterPro:Alfin	EnsemblPlantsGene:GLYMA_18G201700
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0042393	GO:GO:0046872	UniProt:I1N2Y0
InterPro:IPR013083	InterPro:IPR019787	EnsemblPlants:KRH00242	ProteinID:KRH00242	ProteinID:KRH00242.1	PFAM:PF00628
PFAM:PF12165	ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF96	SMART:SM00249
SUPFAM:SSF57903	UniParc:UPI00023D9B0B	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:48175554..48180264

Molecular Weight (calculated)

27057.6 Da

IEP (calculated)

5.090

GRAVY (calculated)

-0.653

Length

239 amino acids

Sequence
(BLAST)

001: MDMASSPRTV EEIFKDYGAR RTAVIRALTH DVDEFYGLCD PDKDNLCLYG HPNEAWEVTL PAEEVPPELP EPALGINFAR DGMNRRDWLS LVAVHSDSWL
101: VSVAFYLGAR LNRNERKRLF SLINDLPSVF EVVTDRKPVK DKPTADSGSK SRGSAKRSSD EQVKSNPKFV DEGYEEDEDE HNETLCGSCG GNYNADEFWI
201: CCDICERWFH GKCVKITPAK AESIKQYKCP SCSLRRGRP

Best Arabidopsis Sequence Match ( AT5G05610.1 )
(BLAST)

001: MAAESSNPRT VEEIFKDFSG RRSGFLRALS VDVDKFYSLC DPEMENLCLY GHPNGTWEVN LPAEEVPPEL PEPALGINFA RDGMQRKDWL SLVAVHSDCW
101: LLSVSSYFGA RLNRNERKRL FSLINDLPTL FEVVTGRKPI KDGKPSMDLG SKSRNGVKRS IEGQTKSTPK LMEESYEDED DEHGDTLCGS CGGNYTNDEF
201: WICCDVCERW YHGKCVKITP AKAESIKQYK CPSCCTKKGR Q

Arabidopsis Description

AL1AL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.