CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47546	Soybean	nucleus	98.02	98.02
KRH23260	Soybean	nucleus	84.98	87.4
KRH10063	Soybean	nucleus	84.58	86.29
KRH37475	Soybean	nucleus	83.79	85.48
Solyc05g032770.2.1	Tomato	nucleus	57.71	84.88
KRH19253	Soybean	nucleus	84.19	84.86
KRH15616	Soybean	nucleus	85.77	84.77
KRH02655	Soybean	nucleus	83.4	83.73
VIT_09s0002g01600.t01	Wine grape	nucleus	86.17	83.52
VIT_04s0008g01670.t01	Wine grape	nucleus	86.96	83.33
KRH71913	Soybean	cytosol	31.23	83.16
Zm00001d049007_P001	Maize	cytosol	38.74	83.05
KRH26115	Soybean	endoplasmic reticulum, extracellular	28.85	82.95
Solyc07g041190.2.1	Tomato	nucleus	77.87	80.08
PGSC0003DMT400054001	Potato	nucleus	77.47	79.35
KRH51269	Soybean	nucleus	74.31	74.9
KRH01887	Soybean	nucleus	74.31	74.6
KRH05401	Soybean	endoplasmic reticulum, nucleus, plastid	71.94	73.39
KRH49390	Soybean	nucleus	61.66	65.27
KRH00242	Soybean	nucleus	61.66	65.27
KRH38049	Soybean	nucleus	61.26	65.13
KRH65724	Soybean	nucleus	61.26	64.85
Zm00001d049006_P001	Maize	plastid	32.41	62.6
KRH61563	Soybean	cytosol	51.78	59.55
KRH56367	Soybean	peroxisome	51.38	59.09
KRH69940	Soybean	peroxisome	49.8	57.27
KRH62601	Soybean	cytosol	33.2	54.19
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	29.64	34.25
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	29.64	34.25

Protein Annotations

EntrezGene:100170700	MapMan:15.5.8	Gene3D:3.30.40.10	EMBL:ACUP02009815	InterPro:Alfin	EMBL:DQ973812
EnsemblPlantsGene:GLYMA_16G005400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0042393	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787	EnsemblPlants:KRH06119
ProteinID:KRH06119	ProteinID:KRH06119.1	PFAM:PF00628	PFAM:PF12165	ScanProsite:PS01359	PFscan:PS50016
PANTHER:PTHR12321	PANTHER:PTHR12321:SF98	UniProt:Q06A73	SMART:SM00249	SUPFAM:SSF57903	TMHMM:TMhelix
UniParc:UPI0000E443E1	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:372237..375739

Molecular Weight (calculated)

28821.7 Da

IEP (calculated)

5.126

GRAVY (calculated)

-0.758

Length

253 amino acids

Sequence
(BLAST)

001: MDSRTYNPRT VEEVFRDFKG RRAGLIKALT TDVEDFYNQC DPEKENLCLY GFPSEQWEVN LPAEEVPPEL PEPVLGINFA RDGMQEKDWL SLVAVHSDAW
101: LLAIAFYFGA RFGFDKADRK RLFNMINELP TIFEVVTGAA KKQVKEKSSV SNHSGSKSKS SSKAQRAPES QSRQSKPLQP KDEDEELDDQ DDDEHGETLC
201: GACGEHYGTD EFWICCDICE KWFHGKCVKI TPARAEHIKQ YKCPSCSNKR ARP

Best Arabidopsis Sequence Match ( AT3G42790.1 )
(BLAST)

001: MEGGAALYNP RTVEEVFKDF KGRRTAIVKA LTTDVQEFYQ QCDPEKENLC LYGLPNEEWE VNLPAEEVPP ELPEPALGIN FARDGLSEKE WLSLVAIHSD
101: AWLLSVSFYF GSRFSFHKEE RKRLFNMIND VPTIFEVVTG MAKAKDKSSA ANQNGNKSKS NSKVRTSEGK SSKTKQPKEE DEEIDEDDED DHGETLCGAC
201: GDSDGADEFW ICCDLCEKWF HGKCVKITPA RAEHIKQYKC PSCSNKRARA

Arabidopsis Description

AL3AL3 [Source:UniProtKB/TrEMBL;Acc:A0A178VCG6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.