Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g041190.2.1 | Tomato | nucleus | 86.63 | 60.57 |
| KRH06119 | Soybean | nucleus | 84.88 | 57.71 |
| KRH47546 | Soybean | nucleus | 84.88 | 57.71 |
| Solyc12g096040.1.1 | Tomato | nucleus | 84.88 | 57.48 |
| VIT_09s0002g01600.t01 | Wine grape | nucleus | 86.63 | 57.09 |
| VIT_04s0008g01670.t01 | Wine grape | nucleus | 87.21 | 56.82 |
| KRH10063 | Soybean | nucleus | 76.74 | 53.23 |
| Solyc06g062850.2.1 | Tomato | nucleus | 79.07 | 52.92 |
| KRH23260 | Soybean | nucleus | 75.58 | 52.85 |
| Solyc01g102750.2.1 | Tomato | nucleus | 74.42 | 51.41 |
| Solyc01g102760.2.1 | Tomato | nucleus | 73.26 | 50.81 |
| Solyc10g076690.1.1 | Tomato | nucleus | 61.63 | 44.17 |
| Solyc09g005360.2.1 | Tomato | nucleus | 61.63 | 43.98 |
| Solyc10g085180.1.1 | Tomato | nucleus | 58.14 | 41.67 |
| Solyc06g051420.2.1 | Tomato | nucleus | 58.72 | 41.22 |
| Solyc03g121930.2.1 | Tomato | nucleus | 62.79 | 39.13 |
| TraesCSU01G246200.1 | Wheat | cytosol, nucleus, plastid | 25.58 | 20.09 |
| TraesCSU01G252500.1 | Wheat | cytosol, nucleus, plastid | 25.58 | 20.09 |
| Solyc05g032760.2.1 | Tomato | extracellular, nucleus | 4.65 | 8.25 |
Protein Annotations
| EnsemblPlants:Solyc05g032770.2.1 | EnsemblPlantsGene:Solyc05g032770.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042393 |
| InterPro:Alfin | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF98 | PFAM:PF12165 | SEG:seg | UniParc:UPI00027660C2 |
| UniProt:K4C058 | MapMan:15.5.8 | : | : | : | : |
Description
No Description!
Coordinates
chr5:+:45064311..45067640
Molecular Weight (calculated)
19497.1 Da
IEP (calculated)
5.377
GRAVY (calculated)
-0.545
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGGAQYNPR TVEEVLKDLK GRRAGLIKAL TTDVEEFYQQ CDPEKENLCL YGFPSEQWEV NLPAEEVPPE LPEPALGINF ARDGMQEKDW LALVAVHSDA
101: WLLSVAFYFG ARFGFDKADR KRLFNMINEL PTIYEIVTGA AKKQVKDRSS SVSNHSSNKS KSNSKLIDRQ LR
101: WLLSVAFYFG ARFGFDKADR KRLFNMINEL PTIYEIVTGA AKKQVKDRSS SVSNHSSNKS KSNSKLIDRQ LR
001: MEGGTAHYSP RTVEEVFRDF KGRRAGIIQA LTTDVEDFFQ QCDPEKQNLC LYGFPNEVWE VNLPAEEVPP ELPEPALGIN FARDGMQERN WLSLVAVHSD
101: AWLLSVSFYF GSRFGFDRAD RKRLFSMINE VPTVYEVVTG NAEKQTKEMP SSANQNGNRS KSNSKMVSLM LSFNKIQNIN YELRTNQILY
101: AWLLSVSFYF GSRFGFDRAD RKRLFSMINE VPTVYEVVTG NAEKQTKEMP SSANQNGNRS KSNSKMVSLM LSFNKIQNIN YELRTNQILY
Arabidopsis Description
AL5PHD finger protein ALFIN-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEM9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.