CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23260	Soybean	nucleus	92.34	93.09
KRH06119	Soybean	nucleus	86.29	84.58
KRH47546	Soybean	nucleus	85.89	84.19
KRH26115	Soybean	endoplasmic reticulum, extracellular	29.84	84.09
KRH19253	Soybean	nucleus	80.24	79.28
KRH15616	Soybean	nucleus	81.45	78.91
Zm00001d049007_P001	Maize	cytosol	37.5	78.81
KRH37475	Soybean	nucleus	78.63	78.63
VIT_09s0002g01600.t01	Wine grape	nucleus	82.66	78.54
VIT_04s0008g01670.t01	Wine grape	nucleus	83.06	78.03
KRH02655	Soybean	nucleus	78.63	77.38
Solyc05g032770.2.1	Tomato	nucleus	53.23	76.74
Solyc07g041190.2.1	Tomato	nucleus	75.4	76.02
PGSC0003DMT400054001	Potato	nucleus	75.0	75.3
KRH51269	Soybean	nucleus	73.39	72.51
KRH01887	Soybean	nucleus	73.39	72.22
KRH71913	Soybean	cytosol	27.02	70.53
KRH05401	Soybean	endoplasmic reticulum, nucleus, plastid	67.74	67.74
KRH38049	Soybean	nucleus	61.69	64.29
KRH49390	Soybean	nucleus	61.69	64.02
KRH65724	Soybean	nucleus	61.29	63.6
KRH00242	Soybean	nucleus	61.29	63.6
KRH61563	Soybean	cytosol	52.82	59.55
Zm00001d049006_P001	Maize	plastid	31.45	59.54
KRH69940	Soybean	peroxisome	52.02	58.64
KRH56367	Soybean	peroxisome	52.02	58.64
KRH62601	Soybean	cytosol	33.47	53.55
TraesCSU01G246200.1	Wheat	cytosol, nucleus, plastid	30.24	34.25
TraesCSU01G252500.1	Wheat	cytosol, nucleus, plastid	30.24	34.25

Protein Annotations

EntrezGene:100777146	MapMan:15.5.8	Gene3D:3.30.40.10	EMBL:ACUP02009118	InterPro:Alfin	EnsemblPlantsGene:GLYMA_15G027300
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0042393	GO:GO:0046872	UniProt:I1MD29
InterPro:IPR013083	InterPro:IPR019787	EnsemblPlants:KRH10063	ProteinID:KRH10063	ProteinID:KRH10063.1	PFAM:PF00628
PFAM:PF12165	ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR12321	PANTHER:PTHR12321:SF98	SMART:SM00249
SUPFAM:SSF57903	UniParc:UPI000233BB8E	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:2191342..2195817

Molecular Weight (calculated)

28130.9 Da

IEP (calculated)

4.478

GRAVY (calculated)

-0.635

Length

248 amino acids

Sequence
(BLAST)

001: MEALSRSVEE IFEDFQGRRA GIIKALTTDV EDFYSQCDPE KENLCLYGFP NEQWEVNLPV EEVPPELPEP VLGINFARDG MLEKDWLSLV AVHSDTWLLA
101: LAFYFGARFG FDKTDRKRLF GMINELPTIF EVVTGEAKKQ VKEKSSVSNN SGNKSKSNSQ AQASETQGRQ SKALQTKDED EELEEQDNDE HGDTLCGACG
201: ENYGTDEFWI CCDICEKWFH GKCVKITPAR AELIKQYKCP SCSNKRAR

Best Arabidopsis Sequence Match ( AT1G14510.1 )
(BLAST)

001: MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS
101: WLISVAFYFG ARFGFGKNER KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSESHT KASKMSPPPR KEDESGDEDE DDEQGAVCGA
201: CGDNYGGDEF WICCDACEKW FHGKCVKITP AKAEHIKHYK CPSCTTSKKM KA

Arabidopsis Description

AL7AtAL7 [Source:UniProtKB/TrEMBL;Acc:A0A178WNG6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.